Results 21 - 40 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13283 | 3' | -55 | NC_003409.1 | + | 15688 | 0.66 | 0.939133 |
Target: 5'- -gGGAGGggUCU--GUACA-CCACCUu -3' miRNA: 3'- ugCCUCCuuGGAugCAUGUgGGUGGG- -5' |
|||||||
13283 | 3' | -55 | NC_003409.1 | + | 51929 | 0.66 | 0.939133 |
Target: 5'- -aGGcuccGGGAACCgUGCGUggagaaagccuAgACCCGCCUg -3' miRNA: 3'- ugCC----UCCUUGG-AUGCA-----------UgUGGGUGGG- -5' |
|||||||
13283 | 3' | -55 | NC_003409.1 | + | 109859 | 0.66 | 0.939133 |
Target: 5'- gGCGGuGGcGCCcgGCGcaacACugCCACCg -3' miRNA: 3'- -UGCCuCCuUGGa-UGCa---UGugGGUGGg -5' |
|||||||
13283 | 3' | -55 | NC_003409.1 | + | 70218 | 0.65 | 0.94377 |
Target: 5'- cGCGGGGGucCCgaguaGUGCACgUCGCCa -3' miRNA: 3'- -UGCCUCCuuGGaug--CAUGUG-GGUGGg -5' |
|||||||
13283 | 3' | -55 | NC_003409.1 | + | 65054 | 0.65 | 0.94377 |
Target: 5'- aGCGG-GGAaaagcACCaGCGU--AUCCGCCCu -3' miRNA: 3'- -UGCCuCCU-----UGGaUGCAugUGGGUGGG- -5' |
|||||||
13283 | 3' | -55 | NC_003409.1 | + | 93371 | 0.73 | 0.620552 |
Target: 5'- uGCGGAGGAugUUguggGCGUggcgACugCCGCCg -3' miRNA: 3'- -UGCCUCCUugGA----UGCA----UGugGGUGGg -5' |
|||||||
13283 | 3' | -55 | NC_003409.1 | + | 13662 | 0.75 | 0.500032 |
Target: 5'- cGCGGAGGAGCUaGCGU-CAaucaCCACCa -3' miRNA: 3'- -UGCCUCCUUGGaUGCAuGUg---GGUGGg -5' |
|||||||
13283 | 3' | -55 | NC_003409.1 | + | 44289 | 0.75 | 0.462042 |
Target: 5'- cACGGAGG-AUCUAC-UGCACCCaACCUc -3' miRNA: 3'- -UGCCUCCuUGGAUGcAUGUGGG-UGGG- -5' |
|||||||
13283 | 3' | -55 | NC_003409.1 | + | 133740 | 0.66 | 0.939133 |
Target: 5'- gGCGuucGGGAuCCacggaGCGUACACCCACguCCa -3' miRNA: 3'- -UGCc--UCCUuGGa----UGCAUGUGGGUG--GG- -5' |
|||||||
13283 | 3' | -55 | NC_003409.1 | + | 30107 | 0.66 | 0.939133 |
Target: 5'- gACGGuGGGGCaaAUGUGuCACCaagCGCCCc -3' miRNA: 3'- -UGCCuCCUUGgaUGCAU-GUGG---GUGGG- -5' |
|||||||
13283 | 3' | -55 | NC_003409.1 | + | 49367 | 0.66 | 0.929143 |
Target: 5'- uACGGuAGGGcuCCUGgGUagcuAUGCCCACCg -3' miRNA: 3'- -UGCC-UCCUu-GGAUgCA----UGUGGGUGGg -5' |
|||||||
13283 | 3' | -55 | NC_003409.1 | + | 118760 | 0.66 | 0.927561 |
Target: 5'- cACGGAGGAcggAUCUcuuggauuuacACGUaucgaggagcggugGCACCCcaggaACCCg -3' miRNA: 3'- -UGCCUCCU---UGGA-----------UGCA--------------UGUGGG-----UGGG- -5' |
|||||||
13283 | 3' | -55 | NC_003409.1 | + | 124081 | 0.66 | 0.925958 |
Target: 5'- uUGGAGGAguaAaggcaggccccguguCCUGCuUGC-CCCACCCu -3' miRNA: 3'- uGCCUCCU---U---------------GGAUGcAUGuGGGUGGG- -5' |
|||||||
13283 | 3' | -55 | NC_003409.1 | + | 118487 | 0.66 | 0.923787 |
Target: 5'- cGCGGcgcaccccAGGAACCcgGCGcggcGCACCCcaGCCUc -3' miRNA: 3'- -UGCC--------UCCUUGGa-UGCa---UGUGGG--UGGG- -5' |
|||||||
13283 | 3' | -55 | NC_003409.1 | + | 22173 | 0.66 | 0.917617 |
Target: 5'- -gGGAGGGACCUGuaaccguCGUuaguaaCCGCCCc -3' miRNA: 3'- ugCCUCCUUGGAU-------GCAugug--GGUGGG- -5' |
|||||||
13283 | 3' | -55 | NC_003409.1 | + | 118924 | 0.67 | 0.906278 |
Target: 5'- aAUGGgagcGGGAugCUAgGUccACGCUCACCUc -3' miRNA: 3'- -UGCC----UCCUugGAUgCA--UGUGGGUGGG- -5' |
|||||||
13283 | 3' | -55 | NC_003409.1 | + | 12265 | 0.67 | 0.906278 |
Target: 5'- uGCGG-GGGGCCggauUGcUGCACucguaCCACCCg -3' miRNA: 3'- -UGCCuCCUUGGau--GC-AUGUG-----GGUGGG- -5' |
|||||||
13283 | 3' | -55 | NC_003409.1 | + | 97901 | 0.68 | 0.85733 |
Target: 5'- -aGGAGGAGuCCUGCGcgGCagACCCcgaguGCCUg -3' miRNA: 3'- ugCCUCCUU-GGAUGCa-UG--UGGG-----UGGG- -5' |
|||||||
13283 | 3' | -55 | NC_003409.1 | + | 121358 | 0.68 | 0.849474 |
Target: 5'- -aGGGGGAguuugACCUAgGUAguCCCugguGCCCu -3' miRNA: 3'- ugCCUCCU-----UGGAUgCAUguGGG----UGGG- -5' |
|||||||
13283 | 3' | -55 | NC_003409.1 | + | 118533 | 0.69 | 0.833173 |
Target: 5'- cGCGGcgcaccccAGGAACCcgGCGcggcGCACCCcaggaACCCg -3' miRNA: 3'- -UGCC--------UCCUUGGa-UGCa---UGUGGG-----UGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home