Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13283 | 3' | -55 | NC_003409.1 | + | 70218 | 0.65 | 0.94377 |
Target: 5'- cGCGGGGGucCCgaguaGUGCACgUCGCCa -3' miRNA: 3'- -UGCCUCCuuGGaug--CAUGUG-GGUGGg -5' |
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13283 | 3' | -55 | NC_003409.1 | + | 82949 | 0.69 | 0.833173 |
Target: 5'- gUGGAGGAACaaaugACGUGgGCCCAgaCg -3' miRNA: 3'- uGCCUCCUUGga---UGCAUgUGGGUggG- -5' |
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13283 | 3' | -55 | NC_003409.1 | + | 86580 | 0.68 | 0.849474 |
Target: 5'- cCGGAGuGGCUaacggGCGUACGCC-GCCCg -3' miRNA: 3'- uGCCUCcUUGGa----UGCAUGUGGgUGGG- -5' |
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13283 | 3' | -55 | NC_003409.1 | + | 86610 | 0.66 | 0.934258 |
Target: 5'- uGCGGGGaccuGGACCUcggGCGc-CGCCUAUCCg -3' miRNA: 3'- -UGCCUC----CUUGGA---UGCauGUGGGUGGG- -5' |
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13283 | 3' | -55 | NC_003409.1 | + | 87181 | 0.71 | 0.702251 |
Target: 5'- gGCGGAGGGcgugGCCg----ACGCgCCACCCu -3' miRNA: 3'- -UGCCUCCU----UGGaugcaUGUG-GGUGGG- -5' |
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13283 | 3' | -55 | NC_003409.1 | + | 93371 | 0.73 | 0.620552 |
Target: 5'- uGCGGAGGAugUUguggGCGUggcgACugCCGCCg -3' miRNA: 3'- -UGCCUCCUugGA----UGCA----UGugGGUGGg -5' |
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13283 | 3' | -55 | NC_003409.1 | + | 97901 | 0.68 | 0.85733 |
Target: 5'- -aGGAGGAGuCCUGCGcgGCagACCCcgaguGCCUg -3' miRNA: 3'- ugCCUCCUU-GGAUGCa-UG--UGGG-----UGGG- -5' |
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13283 | 3' | -55 | NC_003409.1 | + | 100496 | 0.68 | 0.875337 |
Target: 5'- -gGGAGGGucaaGCCUACGUguGCACggggcucgucccgggCCaACCCa -3' miRNA: 3'- ugCCUCCU----UGGAUGCA--UGUG---------------GG-UGGG- -5' |
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13283 | 3' | -55 | NC_003409.1 | + | 103916 | 0.66 | 0.934258 |
Target: 5'- cAUGGAGGGAaugGCcucCACCCACCa -3' miRNA: 3'- -UGCCUCCUUggaUGcauGUGGGUGGg -5' |
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13283 | 3' | -55 | NC_003409.1 | + | 105289 | 0.67 | 0.886647 |
Target: 5'- aACGGcGGAcgucacACCcgACa-ACACCCACCCc -3' miRNA: 3'- -UGCCuCCU------UGGa-UGcaUGUGGGUGGG- -5' |
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13283 | 3' | -55 | NC_003409.1 | + | 105751 | 0.67 | 0.899967 |
Target: 5'- cCGGuugaAGGAGCCcACGUucuCCCGCCa -3' miRNA: 3'- uGCC----UCCUUGGaUGCAuguGGGUGGg -5' |
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13283 | 3' | -55 | NC_003409.1 | + | 109859 | 0.66 | 0.939133 |
Target: 5'- gGCGGuGGcGCCcgGCGcaacACugCCACCg -3' miRNA: 3'- -UGCCuCCuUGGa-UGCa---UGugGGUGGg -5' |
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13283 | 3' | -55 | NC_003409.1 | + | 110877 | 0.66 | 0.923787 |
Target: 5'- aACGu-GGAACuCU-CGUGCugCgGCCCg -3' miRNA: 3'- -UGCcuCCUUG-GAuGCAUGugGgUGGG- -5' |
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13283 | 3' | -55 | NC_003409.1 | + | 114579 | 0.74 | 0.569498 |
Target: 5'- uGCGGgugucgcgcuuuGGGGGCCUGCcaGC-CCCACCCc -3' miRNA: 3'- -UGCC------------UCCUUGGAUGcaUGuGGGUGGG- -5' |
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13283 | 3' | -55 | NC_003409.1 | + | 114796 | 0.66 | 0.923787 |
Target: 5'- uGCaGAGuGGucACCUGCccugcuccACACCCACCCc -3' miRNA: 3'- -UGcCUC-CU--UGGAUGca------UGUGGGUGGG- -5' |
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13283 | 3' | -55 | NC_003409.1 | + | 115431 | 0.66 | 0.91819 |
Target: 5'- -aGGAGGAgGCC-ACcgGC-CCCACCCc -3' miRNA: 3'- ugCCUCCU-UGGaUGcaUGuGGGUGGG- -5' |
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13283 | 3' | -55 | NC_003409.1 | + | 118304 | 0.69 | 0.798427 |
Target: 5'- -gGGAGGAGgCUgGgGUGCGCCgCGCCg -3' miRNA: 3'- ugCCUCCUUgGA-UgCAUGUGG-GUGGg -5' |
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13283 | 3' | -55 | NC_003409.1 | + | 118487 | 0.66 | 0.923787 |
Target: 5'- cGCGGcgcaccccAGGAACCcgGCGcggcGCACCCcaGCCUc -3' miRNA: 3'- -UGCC--------UCCUUGGa-UGCa---UGUGGG--UGGG- -5' |
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13283 | 3' | -55 | NC_003409.1 | + | 118533 | 0.69 | 0.833173 |
Target: 5'- cGCGGcgcaccccAGGAACCcgGCGcggcGCACCCcaggaACCCg -3' miRNA: 3'- -UGCC--------UCCUUGGa-UGCa---UGUGGG-----UGGG- -5' |
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13283 | 3' | -55 | NC_003409.1 | + | 118578 | 0.69 | 0.798427 |
Target: 5'- cGCGGcgcaccccAGGAACCcgGCGcggcGCACCCaggaACCCg -3' miRNA: 3'- -UGCC--------UCCUUGGa-UGCa---UGUGGG----UGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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