Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 13283 | 3' | -55 | NC_003409.1 | + | 118760 | 0.66 | 0.927561 |
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Target: 5'- cACGGAGGAcggAUCUcuuggauuuacACGUaucgaggagcggugGCACCCcaggaACCCg -3' miRNA: 3'- -UGCCUCCU---UGGA-----------UGCA--------------UGUGGG-----UGGG- -5' |
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| 13283 | 3' | -55 | NC_003409.1 | + | 118924 | 0.67 | 0.906278 |
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Target: 5'- aAUGGgagcGGGAugCUAgGUccACGCUCACCUc -3' miRNA: 3'- -UGCC----UCCUugGAUgCA--UGUGGGUGGG- -5' |
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| 13283 | 3' | -55 | NC_003409.1 | + | 119655 | 0.69 | 0.816136 |
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Target: 5'- cUGGAGGuGACCc-CGUGCACCCgggcGCUCu -3' miRNA: 3'- uGCCUCC-UUGGauGCAUGUGGG----UGGG- -5' |
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| 13283 | 3' | -55 | NC_003409.1 | + | 121358 | 0.68 | 0.849474 |
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Target: 5'- -aGGGGGAguuugACCUAgGUAguCCCugguGCCCu -3' miRNA: 3'- ugCCUCCU-----UGGAUgCAUguGGG----UGGG- -5' |
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| 13283 | 3' | -55 | NC_003409.1 | + | 124081 | 0.66 | 0.925958 |
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Target: 5'- uUGGAGGAguaAaggcaggccccguguCCUGCuUGC-CCCACCCu -3' miRNA: 3'- uGCCUCCU---U---------------GGAUGcAUGuGGGUGGG- -5' |
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| 13283 | 3' | -55 | NC_003409.1 | + | 128805 | 0.66 | 0.929143 |
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Target: 5'- gAUGGAcaccccGuGAACCguCGUGCuuACCCACCCc -3' miRNA: 3'- -UGCCU------C-CUUGGauGCAUG--UGGGUGGG- -5' |
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| 13283 | 3' | -55 | NC_003409.1 | + | 131696 | 0.72 | 0.661594 |
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Target: 5'- gGCGGccAGGGACuaccgCUGCGUggcACACCCACUg -3' miRNA: 3'- -UGCC--UCCUUG-----GAUGCA---UGUGGGUGGg -5' |
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| 13283 | 3' | -55 | NC_003409.1 | + | 133345 | 0.71 | 0.73215 |
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Target: 5'- cACGGAuGGACCgg---ACACCUACCCu -3' miRNA: 3'- -UGCCUcCUUGGaugcaUGUGGGUGGG- -5' |
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| 13283 | 3' | -55 | NC_003409.1 | + | 133740 | 0.66 | 0.939133 |
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Target: 5'- gGCGuucGGGAuCCacggaGCGUACACCCACguCCa -3' miRNA: 3'- -UGCc--UCCUuGGa----UGCAUGUGGGUG--GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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