miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13284 3' -62.7 NC_003409.1 + 83864 0.7 0.356784
Target:  5'- cGCGGggacGGgGCGUGGGGCUcuaacuugccaACCGCCa -3'
miRNA:   3'- -UGCCaa--CCgUGCGUCCCGG-----------UGGCGGc -5'
13284 3' -62.7 NC_003409.1 + 92122 0.7 0.356784
Target:  5'- -gGGUcccGGUACGCGucccuguuucuGGGCCGCCgGCCGu -3'
miRNA:   3'- ugCCAa--CCGUGCGU-----------CCCGGUGG-CGGC- -5'
13284 3' -62.7 NC_003409.1 + 107028 0.71 0.320141
Target:  5'- -aGGgaccagGGCGCGgAcaaguGGGCCACUGCCGu -3'
miRNA:   3'- ugCCaa----CCGUGCgU-----CCCGGUGGCGGC- -5'
13284 3' -62.7 NC_003409.1 + 126393 0.71 0.306294
Target:  5'- gGCGGUUGGCgugGCGgAGuaucGCCAUCGCUGg -3'
miRNA:   3'- -UGCCAACCG---UGCgUCc---CGGUGGCGGC- -5'
13284 3' -62.7 NC_003409.1 + 24744 0.72 0.286393
Target:  5'- cCGGggagggGGCGCGcCGGGGCUccugggguGCUGCCGg -3'
miRNA:   3'- uGCCaa----CCGUGC-GUCCCGG--------UGGCGGC- -5'
13284 3' -62.7 NC_003409.1 + 104842 0.74 0.197194
Target:  5'- gACGGgacgUGGCggaaaugaaggACGCGGuGGCCACCaGCCa -3'
miRNA:   3'- -UGCCa---ACCG-----------UGCGUC-CCGGUGG-CGGc -5'
13284 3' -62.7 NC_003409.1 + 110028 0.74 0.206858
Target:  5'- uACGG-UGGCaguguuGCGcCGGGcGCCACCGCCu -3'
miRNA:   3'- -UGCCaACCG------UGC-GUCC-CGGUGGCGGc -5'
13284 3' -62.7 NC_003409.1 + 49097 0.75 0.182996
Target:  5'- gGCGGcucgacugUGGCGCGCcaccccacuaggcAGGGCCACCGUgGc -3'
miRNA:   3'- -UGCCa-------ACCGUGCG-------------UCCCGGUGGCGgC- -5'
13284 3' -62.7 NC_003409.1 + 109539 0.76 0.147153
Target:  5'- -aGGUcaGGuCGCGCGGGGCCAgCGCCa -3'
miRNA:   3'- ugCCAa-CC-GUGCGUCCCGGUgGCGGc -5'
13284 3' -62.7 NC_003409.1 + 31385 1.07 0.000873
Target:  5'- aACGGUUGGCACGCAGGGCCACCGCCGu -3'
miRNA:   3'- -UGCCAACCGUGCGUCCCGGUGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.