miRNA display CGI

Results 21 - 30 of 30 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
13284	3'	-62.7	NC_003409.1	+	33987	0.67	0.539404
	Target:  5'- -gGGUacgGGCGCGcCAGGGaCAgCGCCc -3' miRNA:   3'- ugCCAa--CCGUGC-GUCCCgGUgGCGGc -5'
13284	3'	-62.7	NC_003409.1	+	97993	0.67	0.509066
	Target:  5'- gACGGcucuucagugccUGGCAgaucCAGGGUCACCGCCu -3' miRNA:   3'- -UGCCa-----------ACCGUgc--GUCCCGGUGGCGGc -5'
13284	3'	-62.7	NC_003409.1	+	16791	0.67	0.498801
	Target:  5'- cUGGc-GGcCGCGCGGGGCCAgcguaauuuuugguCCGCUGu -3' miRNA:   3'- uGCCaaCC-GUGCGUCCCGGU--------------GGCGGC- -5'
13284	3'	-62.7	NC_003409.1	+	133203	0.68	0.483123
	Target:  5'- cCGGUggugaGGCACcuGCAGGcGCUGgCGCCGc -3' miRNA:   3'- uGCCAa----CCGUG--CGUCC-CGGUgGCGGC- -5'
13284	3'	-62.7	NC_003409.1	+	87346	0.68	0.474012
	Target:  5'- -aGGgUGGCGCGUc-GGCCAcgcccuCCGCCGg -3' miRNA:   3'- ugCCaACCGUGCGucCCGGU------GGCGGC- -5'
13284	3'	-62.7	NC_003409.1	+	121978	0.68	0.464988
	Target:  5'- cGCGGUUGuuUACGCAGGGUgcggUGCUGCCc -3' miRNA:   3'- -UGCCAACc-GUGCGUCCCG----GUGGCGGc -5'
13284	3'	-62.7	NC_003409.1	+	55449	0.69	0.42128
	Target:  5'- aGCGaaUGGCGgGCGGcaaGCCGCCGCCc -3' miRNA:   3'- -UGCcaACCGUgCGUCc--CGGUGGCGGc -5'
13284	3'	-62.7	NC_003409.1	+	92122	0.7	0.356784
	Target:  5'- -gGGUcccGGUACGCGucccuguuucuGGGCCGCCgGCCGu -3' miRNA:   3'- ugCCAa--CCGUGCGU-----------CCCGGUGG-CGGC- -5'
13284	3'	-62.7	NC_003409.1	+	24744	0.72	0.286393
	Target:  5'- cCGGggagggGGCGCGcCGGGGCUccugggguGCUGCCGg -3' miRNA:   3'- uGCCaa----CCGUGC-GUCCCGG--------UGGCGGC- -5'
13284	3'	-62.7	NC_003409.1	+	131700	0.66	0.60758
	Target:  5'- uGCGGgcGGC---CAGGGaCUACCGCUGc -3' miRNA:   3'- -UGCCaaCCGugcGUCCC-GGUGGCGGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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