Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13284 | 3' | -62.7 | NC_003409.1 | + | 107809 | 0.66 | 0.558675 |
Target: 5'- cACGGUgGGCACGCcccuGGaGCUcCCuGCCa -3' miRNA: 3'- -UGCCAaCCGUGCGu---CC-CGGuGG-CGGc -5' |
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13284 | 3' | -62.7 | NC_003409.1 | + | 109539 | 0.76 | 0.147153 |
Target: 5'- -aGGUcaGGuCGCGCGGGGCCAgCGCCa -3' miRNA: 3'- ugCCAa-CC-GUGCGUCCCGGUgGCGGc -5' |
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13284 | 3' | -62.7 | NC_003409.1 | + | 110028 | 0.74 | 0.206858 |
Target: 5'- uACGG-UGGCaguguuGCGcCGGGcGCCACCGCCu -3' miRNA: 3'- -UGCCaACCG------UGC-GUCC-CGGUGGCGGc -5' |
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13284 | 3' | -62.7 | NC_003409.1 | + | 121978 | 0.68 | 0.464988 |
Target: 5'- cGCGGUUGuuUACGCAGGGUgcggUGCUGCCc -3' miRNA: 3'- -UGCCAACc-GUGCGUCCCG----GUGGCGGc -5' |
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13284 | 3' | -62.7 | NC_003409.1 | + | 126393 | 0.71 | 0.306294 |
Target: 5'- gGCGGUUGGCgugGCGgAGuaucGCCAUCGCUGg -3' miRNA: 3'- -UGCCAACCG---UGCgUCc---CGGUGGCGGC- -5' |
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13284 | 3' | -62.7 | NC_003409.1 | + | 128046 | 0.66 | 0.547087 |
Target: 5'- cGCGGUUGGgggugccCGCGUucaGGGGCCcaugcggggcucuGCUGCCc -3' miRNA: 3'- -UGCCAACC-------GUGCG---UCCCGG-------------UGGCGGc -5' |
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13284 | 3' | -62.7 | NC_003409.1 | + | 130623 | 0.68 | 0.441956 |
Target: 5'- -gGGUuucugggauagugucUGGCugGCAGGGUCucauCCGCgGc -3' miRNA: 3'- ugCCA---------------ACCGugCGUCCCGGu---GGCGgC- -5' |
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13284 | 3' | -62.7 | NC_003409.1 | + | 131700 | 0.66 | 0.60758 |
Target: 5'- uGCGGgcGGC---CAGGGaCUACCGCUGc -3' miRNA: 3'- -UGCCaaCCGugcGUCCC-GGUGGCGGC- -5' |
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13284 | 3' | -62.7 | NC_003409.1 | + | 133203 | 0.68 | 0.483123 |
Target: 5'- cCGGUggugaGGCACcuGCAGGcGCUGgCGCCGc -3' miRNA: 3'- uGCCAa----CCGUG--CGUCC-CGGUgGCGGC- -5' |
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13284 | 3' | -62.7 | NC_003409.1 | + | 133599 | 0.66 | 0.568384 |
Target: 5'- aACGccuGUcUGGCACaguucCAGGGCCACCGUUc -3' miRNA: 3'- -UGC---CA-ACCGUGc----GUCCCGGUGGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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