Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13284 | 3' | -62.7 | NC_003409.1 | + | 70536 | 0.66 | 0.607579 |
Target: 5'- cUGGUggGGCGCgGCAGcugacucaaaaaGGUCACUGCCu -3' miRNA: 3'- uGCCAa-CCGUG-CGUC------------CCGGUGGCGGc -5' |
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13284 | 3' | -62.7 | NC_003409.1 | + | 67802 | 0.7 | 0.380142 |
Target: 5'- cGCGGUgggugcGGCGCGCAGGG--GgCGCCa -3' miRNA: 3'- -UGCCAa-----CCGUGCGUCCCggUgGCGGc -5' |
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13284 | 3' | -62.7 | NC_003409.1 | + | 55449 | 0.69 | 0.42128 |
Target: 5'- aGCGaaUGGCGgGCGGcaaGCCGCCGCCc -3' miRNA: 3'- -UGCcaACCGUgCGUCc--CGGUGGCGGc -5' |
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13284 | 3' | -62.7 | NC_003409.1 | + | 51487 | 0.67 | 0.529852 |
Target: 5'- cCGGUUcagccGGuCGC-CAGGGUCAucCCGCCGg -3' miRNA: 3'- uGCCAA-----CC-GUGcGUCCCGGU--GGCGGC- -5' |
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13284 | 3' | -62.7 | NC_003409.1 | + | 49097 | 0.75 | 0.182996 |
Target: 5'- gGCGGcucgacugUGGCGCGCcaccccacuaggcAGGGCCACCGUgGc -3' miRNA: 3'- -UGCCa-------ACCGUGCG-------------UCCCGGUGGCGgC- -5' |
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13284 | 3' | -62.7 | NC_003409.1 | + | 33987 | 0.67 | 0.539404 |
Target: 5'- -gGGUacgGGCGCGcCAGGGaCAgCGCCc -3' miRNA: 3'- ugCCAa--CCGUGC-GUCCCgGUgGCGGc -5' |
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13284 | 3' | -62.7 | NC_003409.1 | + | 31385 | 1.07 | 0.000873 |
Target: 5'- aACGGUUGGCACGCAGGGCCACCGCCGu -3' miRNA: 3'- -UGCCAACCGUGCGUCCCGGUGGCGGC- -5' |
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13284 | 3' | -62.7 | NC_003409.1 | + | 24744 | 0.72 | 0.286393 |
Target: 5'- cCGGggagggGGCGCGcCGGGGCUccugggguGCUGCCGg -3' miRNA: 3'- uGCCaa----CCGUGC-GUCCCGG--------UGGCGGC- -5' |
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13284 | 3' | -62.7 | NC_003409.1 | + | 16791 | 0.67 | 0.498801 |
Target: 5'- cUGGc-GGcCGCGCGGGGCCAgcguaauuuuugguCCGCUGu -3' miRNA: 3'- uGCCaaCC-GUGCGUCCCGGU--------------GGCGGC- -5' |
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13284 | 3' | -62.7 | NC_003409.1 | + | 13026 | 0.66 | 0.587922 |
Target: 5'- cGCGGUUaGCGgGUaucagGGGGCCACUGUa- -3' miRNA: 3'- -UGCCAAcCGUgCG-----UCCCGGUGGCGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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