miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13284 5' -56.6 NC_003409.1 + 38617 0.66 0.838853
Target:  5'- uUGCGcGCcgaGGC-GCCGCAGUc-GUCCGCu -3'
miRNA:   3'- -ACGU-CG---UCGuCGGCGUCAucUAGGUG- -5'
13284 5' -56.6 NC_003409.1 + 32010 0.66 0.838013
Target:  5'- aGCAcGUaAGUAGCUGCAGgcUGGAggaccuuUCCACa -3'
miRNA:   3'- aCGU-CG-UCGUCGGCGUC--AUCU-------AGGUG- -5'
13284 5' -56.6 NC_003409.1 + 43788 0.66 0.830361
Target:  5'- cGUAGCuGGCguaGGCCGCGGgcccGGAcauggcacuuUCCACu -3'
miRNA:   3'- aCGUCG-UCG---UCGGCGUCa---UCU----------AGGUG- -5'
13284 5' -56.6 NC_003409.1 + 59962 0.66 0.830361
Target:  5'- cGCGGCGGUGGCCGUAuaucGggCCAa -3'
miRNA:   3'- aCGUCGUCGUCGGCGUcau-CuaGGUg -5'
13284 5' -56.6 NC_003409.1 + 14041 0.66 0.821678
Target:  5'- cGCGGCcuugacgcucGGCucCCGCAGUaugAGGUCCAg -3'
miRNA:   3'- aCGUCG----------UCGucGGCGUCA---UCUAGGUg -5'
13284 5' -56.6 NC_003409.1 + 49221 0.66 0.821678
Target:  5'- aUGCAGCAGUAGaCGCAGgcGc-CUAUg -3'
miRNA:   3'- -ACGUCGUCGUCgGCGUCauCuaGGUG- -5'
13284 5' -56.6 NC_003409.1 + 113521 0.66 0.821678
Target:  5'- gUGCGgcGCAGCAGCUGCu-UGGcgcCCACg -3'
miRNA:   3'- -ACGU--CGUCGUCGGCGucAUCua-GGUG- -5'
13284 5' -56.6 NC_003409.1 + 125091 0.66 0.818154
Target:  5'- aGCAGCAGCAGCaggaugagcagcaGCAGcaGGAUgaACa -3'
miRNA:   3'- aCGUCGUCGUCGg------------CGUCa-UCUAggUG- -5'
13284 5' -56.6 NC_003409.1 + 33013 0.66 0.812814
Target:  5'- cGCaAGgAGCAGCCuGCAGgGGAgcaCACu -3'
miRNA:   3'- aCG-UCgUCGUCGG-CGUCaUCUag-GUG- -5'
13284 5' -56.6 NC_003409.1 + 31197 0.66 0.812814
Target:  5'- cUGCGGCuGCuGCUGCAGaGGAggaCgGCg -3'
miRNA:   3'- -ACGUCGuCGuCGGCGUCaUCUa--GgUG- -5'
13284 5' -56.6 NC_003409.1 + 125145 0.66 0.790854
Target:  5'- aGCAGCAGCAGCaggaugagcagcaGCAGcaGGAUgaGCa -3'
miRNA:   3'- aCGUCGUCGUCGg------------CGUCa-UCUAggUG- -5'
13284 5' -56.6 NC_003409.1 + 85872 0.67 0.785223
Target:  5'- gGUGGCGGCAGUgcgaCGCA--AGuAUCCACa -3'
miRNA:   3'- aCGUCGUCGUCG----GCGUcaUC-UAGGUG- -5'
13284 5' -56.6 NC_003409.1 + 69528 0.67 0.746455
Target:  5'- gGCuaaaAGCAGCAGCCGgAG-AGcgCaCGCa -3'
miRNA:   3'- aCG----UCGUCGUCGGCgUCaUCuaG-GUG- -5'
13284 5' -56.6 NC_003409.1 + 106382 0.68 0.740479
Target:  5'- aGCAGUGGCAG-CGCucuGUAGGuaugccuguagacuuUCCACc -3'
miRNA:   3'- aCGUCGUCGUCgGCGu--CAUCU---------------AGGUG- -5'
13284 5' -56.6 NC_003409.1 + 19218 0.68 0.736475
Target:  5'- cGUAGUAcGCGGCUGCAGcgacguGAUCUAUc -3'
miRNA:   3'- aCGUCGU-CGUCGGCGUCau----CUAGGUG- -5'
13284 5' -56.6 NC_003409.1 + 125981 0.68 0.716237
Target:  5'- aGCAGCAGgAGCCacaacaGCAGgag--CCACa -3'
miRNA:   3'- aCGUCGUCgUCGG------CGUCaucuaGGUG- -5'
13284 5' -56.6 NC_003409.1 + 93544 0.68 0.695697
Target:  5'- gGCGGCGGCAGUCGCcacgc--CCACa -3'
miRNA:   3'- aCGUCGUCGUCGGCGucaucuaGGUG- -5'
13284 5' -56.6 NC_003409.1 + 109944 0.69 0.674934
Target:  5'- cGCAGCAGUccagaAGCCGUGucGGAUUCAUc -3'
miRNA:   3'- aCGUCGUCG-----UCGGCGUcaUCUAGGUG- -5'
13284 5' -56.6 NC_003409.1 + 132814 0.69 0.674934
Target:  5'- gGCGcGCGGCGcGCUGCAGUAccUCCAa -3'
miRNA:   3'- aCGU-CGUCGU-CGGCGUCAUcuAGGUg -5'
13284 5' -56.6 NC_003409.1 + 47330 0.69 0.654023
Target:  5'- cUGCAGCAGCuGuuGguGUA---CCACa -3'
miRNA:   3'- -ACGUCGUCGuCggCguCAUcuaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.