miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13289 3' -56 NC_003409.1 + 45392 0.66 0.900655
Target:  5'- --cGuCACCCAGGCCGCuCGCgugaucacaaagcgGGACCc -3'
miRNA:   3'- uccC-GUGGGUUUGGCG-GCGaa------------CUUGG- -5'
13289 3' -56 NC_003409.1 + 25929 0.66 0.900011
Target:  5'- cGGGgGCCCGAA-CGaCCGUgcgGGACUu -3'
miRNA:   3'- uCCCgUGGGUUUgGC-GGCGaa-CUUGG- -5'
13289 3' -56 NC_003409.1 + 11491 0.66 0.893439
Target:  5'- cGGGGCgACCCGGcgugGuuGCCGUggacACCa -3'
miRNA:   3'- -UCCCG-UGGGUU----UggCGGCGaacuUGG- -5'
13289 3' -56 NC_003409.1 + 27823 0.66 0.893439
Target:  5'- ----gACCCAucaacACCGCUGCUUGAGgCg -3'
miRNA:   3'- ucccgUGGGUu----UGGCGGCGAACUUgG- -5'
13289 3' -56 NC_003409.1 + 92097 0.66 0.893439
Target:  5'- uGGGcCGCC--GGCCGUCGCcUGAAUa -3'
miRNA:   3'- uCCC-GUGGguUUGGCGGCGaACUUGg -5'
13289 3' -56 NC_003409.1 + 86939 0.66 0.892769
Target:  5'- gGGGGUuauggaCCAGaacaaucuuuaguGCCGCCGCcuUUGggUCu -3'
miRNA:   3'- -UCCCGug----GGUU-------------UGGCGGCG--AACuuGG- -5'
13289 3' -56 NC_003409.1 + 22610 0.66 0.886635
Target:  5'- uGGGGCugCUcuucuGggUgGCCGUgaUUGAGCUa -3'
miRNA:   3'- -UCCCGugGG-----UuuGgCGGCG--AACUUGG- -5'
13289 3' -56 NC_003409.1 + 109333 0.66 0.886635
Target:  5'- cGGGaGCCgGAGCaCGCCGCcccGGACg -3'
miRNA:   3'- uCCCgUGGgUUUG-GCGGCGaa-CUUGg -5'
13289 3' -56 NC_003409.1 + 67969 0.66 0.886635
Target:  5'- cGuGGCGCCCccuGCgCGCCGCacccACCg -3'
miRNA:   3'- uC-CCGUGGGuu-UG-GCGGCGaacuUGG- -5'
13289 3' -56 NC_003409.1 + 19452 0.66 0.886635
Target:  5'- gGGGGCcgcugGCCUu-GCCGCUGCgacgUGggUUu -3'
miRNA:   3'- -UCCCG-----UGGGuuUGGCGGCGa---ACuuGG- -5'
13289 3' -56 NC_003409.1 + 25784 0.66 0.879603
Target:  5'- cGGGCcCCCGu-CCGgcucgucuCCGgaUGAACCg -3'
miRNA:   3'- uCCCGuGGGUuuGGC--------GGCgaACUUGG- -5'
13289 3' -56 NC_003409.1 + 18940 0.66 0.879603
Target:  5'- cGGGGCcaucuuggucGCCUGGACUGCCcccGCg-GGGCCa -3'
miRNA:   3'- -UCCCG----------UGGGUUUGGCGG---CGaaCUUGG- -5'
13289 3' -56 NC_003409.1 + 93941 0.66 0.875276
Target:  5'- uGGGCugCUuuggacggcuauuaaGGACCGCCaaUcGAGCCa -3'
miRNA:   3'- uCCCGugGG---------------UUUGGCGGcgAaCUUGG- -5'
13289 3' -56 NC_003409.1 + 131962 0.66 0.872347
Target:  5'- -aGGCACCCAAuACC-CC-CUcUGAACCc -3'
miRNA:   3'- ucCCGUGGGUU-UGGcGGcGA-ACUUGG- -5'
13289 3' -56 NC_003409.1 + 97732 0.66 0.872347
Target:  5'- -aGGCACUCGGgguCUGCCGCgcaGGACUc -3'
miRNA:   3'- ucCCGUGGGUUu--GGCGGCGaa-CUUGG- -5'
13289 3' -56 NC_003409.1 + 103802 0.66 0.864872
Target:  5'- cAGGaCACCCGAcccGCCaGCCGCccccuGCCg -3'
miRNA:   3'- -UCCcGUGGGUU---UGG-CGGCGaacu-UGG- -5'
13289 3' -56 NC_003409.1 + 40965 0.66 0.864872
Target:  5'- uGGcuuGCAUUaggCGAGCCGCCGCccgGGGCCu -3'
miRNA:   3'- uCC---CGUGG---GUUUGGCGGCGaa-CUUGG- -5'
13289 3' -56 NC_003409.1 + 107709 0.66 0.864872
Target:  5'- --cGCACCauaGGGCUGCCGCU-GGugCg -3'
miRNA:   3'- uccCGUGGg--UUUGGCGGCGAaCUugG- -5'
13289 3' -56 NC_003409.1 + 28641 0.66 0.864872
Target:  5'- uGGGacuGCCCAGucaccuugGCUGCCGCUUc-ACCu -3'
miRNA:   3'- uCCCg--UGGGUU--------UGGCGGCGAAcuUGG- -5'
13289 3' -56 NC_003409.1 + 102006 0.66 0.864872
Target:  5'- --uGCACCCAGGcCCGCCuggaauccuuUUUGAGCCg -3'
miRNA:   3'- uccCGUGGGUUU-GGCGGc---------GAACUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.