miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13289 3' -56 NC_003409.1 + 33808 1.12 0.001663
Target:  5'- gAGGGCACCCAAACCGCCGCUUGAACCu -3'
miRNA:   3'- -UCCCGUGGGUUUGGCGGCGAACUUGG- -5'
13289 3' -56 NC_003409.1 + 132946 0.76 0.372424
Target:  5'- -cGGCAUCCGGACCgGCCGCggGAuCCg -3'
miRNA:   3'- ucCCGUGGGUUUGG-CGGCGaaCUuGG- -5'
13289 3' -56 NC_003409.1 + 3856 0.75 0.423758
Target:  5'- cGGGCACCaguuuGCCGCCGUacagucucuccUUGAAUCc -3'
miRNA:   3'- uCCCGUGGguu--UGGCGGCG-----------AACUUGG- -5'
13289 3' -56 NC_003409.1 + 115802 0.73 0.48867
Target:  5'- cAGaGGCACCCAAGgCGCUGCa--GACCc -3'
miRNA:   3'- -UC-CCGUGGGUUUgGCGGCGaacUUGG- -5'
13289 3' -56 NC_003409.1 + 27937 0.73 0.48867
Target:  5'- cAGGGguCCCuccaguGCaCGCCGCUaggugGGACCg -3'
miRNA:   3'- -UCCCguGGGuu----UG-GCGGCGAa----CUUGG- -5'
13289 3' -56 NC_003409.1 + 76945 0.73 0.527789
Target:  5'- gGGGGCACCgcUAAACCGCCuCcUGGuGCCa -3'
miRNA:   3'- -UCCCGUGG--GUUUGGCGGcGaACU-UGG- -5'
13289 3' -56 NC_003409.1 + 98164 0.72 0.547786
Target:  5'- cAGGGCucgugCCAGGgCGCCGUUUGuaGACCa -3'
miRNA:   3'- -UCCCGug---GGUUUgGCGGCGAAC--UUGG- -5'
13289 3' -56 NC_003409.1 + 101489 0.72 0.568015
Target:  5'- aGGGGguUCUAAAaaauaCGCCGCgcGAACCa -3'
miRNA:   3'- -UCCCguGGGUUUg----GCGGCGaaCUUGG- -5'
13289 3' -56 NC_003409.1 + 128234 0.72 0.588427
Target:  5'- gAGGGCAgCaGAGCC-CCGCaUGGGCCc -3'
miRNA:   3'- -UCCCGUgGgUUUGGcGGCGaACUUGG- -5'
13289 3' -56 NC_003409.1 + 42933 0.71 0.598684
Target:  5'- uGGagacCGCCCucGCCGCCGCUUGcgucaauACCg -3'
miRNA:   3'- uCCc---GUGGGuuUGGCGGCGAACu------UGG- -5'
13289 3' -56 NC_003409.1 + 74162 0.71 0.602795
Target:  5'- uGGGUguugucgccucugccGCCguAGCCGCCGCcgUUGAAUCu -3'
miRNA:   3'- uCCCG---------------UGGguUUGGCGGCG--AACUUGG- -5'
13289 3' -56 NC_003409.1 + 21938 0.71 0.619268
Target:  5'- aAGGGCAUCCu-GCuCGUCGCUgugcUGAcuGCCu -3'
miRNA:   3'- -UCCCGUGGGuuUG-GCGGCGA----ACU--UGG- -5'
13289 3' -56 NC_003409.1 + 119957 0.71 0.629578
Target:  5'- -cGGCGCCCAcGCCGgCGCcUGGcacgcgGCCa -3'
miRNA:   3'- ucCCGUGGGUuUGGCgGCGaACU------UGG- -5'
13289 3' -56 NC_003409.1 + 34282 0.7 0.691188
Target:  5'- cGGaCACCCAGGCCGC-GCUUu-GCCu -3'
miRNA:   3'- uCCcGUGGGUUUGGCGgCGAAcuUGG- -5'
13289 3' -56 NC_003409.1 + 133102 0.7 0.660487
Target:  5'- uAGGGC-CCUuGGCaaGCCGCU-GGACCa -3'
miRNA:   3'- -UCCCGuGGGuUUGg-CGGCGAaCUUGG- -5'
13289 3' -56 NC_003409.1 + 131698 0.7 0.660487
Target:  5'- cGGGCGgCCAGggacuACCGCUGCgUGGcacACCc -3'
miRNA:   3'- uCCCGUgGGUU-----UGGCGGCGaACU---UGG- -5'
13289 3' -56 NC_003409.1 + 116076 0.7 0.670756
Target:  5'- cAGGGCAUCCGcGGCCGCCGgacagcucCUcGAuGCCa -3'
miRNA:   3'- -UCCCGUGGGU-UUGGCGGC--------GAaCU-UGG- -5'
13289 3' -56 NC_003409.1 + 109147 0.7 0.670756
Target:  5'- aGGGGCGUggAGGCUGCCGCUUGuuuCCu -3'
miRNA:   3'- -UCCCGUGggUUUGGCGGCGAACuu-GG- -5'
13289 3' -56 NC_003409.1 + 56339 0.7 0.71142
Target:  5'- -aGGCGCCaCGAcCCagaCGCUUGGACCa -3'
miRNA:   3'- ucCCGUGG-GUUuGGcg-GCGAACUUGG- -5'
13289 3' -56 NC_003409.1 + 110009 0.69 0.71844
Target:  5'- cGGGCGCCaccgccucCCGCCGCggcgucuugggcggcGGACCa -3'
miRNA:   3'- uCCCGUGGguuu----GGCGGCGaa-------------CUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.