Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13289 | 3' | -56 | NC_003409.1 | + | 119805 | 0.69 | 0.731378 |
Target: 5'- cGGGGuCACcuCCAGGuCaCGCCGCUaggugGGACCg -3' miRNA: 3'- -UCCC-GUG--GGUUU-G-GCGGCGAa----CUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 30515 | 0.69 | 0.741231 |
Target: 5'- cAGGGCucgccCCCAGuucauguuuccAUCGCCGCU--AACCu -3' miRNA: 3'- -UCCCGu----GGGUU-----------UGGCGGCGAacUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 10035 | 0.69 | 0.750987 |
Target: 5'- uGGGCugCCAGAccaaauagaguCCGCCuGUUguguggaaguacUGGACCg -3' miRNA: 3'- uCCCGugGGUUU-----------GGCGG-CGA------------ACUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 23204 | 0.69 | 0.731378 |
Target: 5'- cGGGGuCACCUccaggucaCGCCGCUaggugGGACCg -3' miRNA: 3'- -UCCC-GUGGGuuug----GCGGCGAa----CUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 14971 | 0.69 | 0.721438 |
Target: 5'- cGaGGCACCCcuACCGUCGCgcGAgacGCUg -3' miRNA: 3'- uC-CCGUGGGuuUGGCGGCGaaCU---UGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 69294 | 0.69 | 0.760637 |
Target: 5'- uAGGGUGCCCcuaaAGACCGuCUGUUgcAACCa -3' miRNA: 3'- -UCCCGUGGG----UUUGGC-GGCGAacUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 121715 | 0.69 | 0.741231 |
Target: 5'- cAGGGCua--GAGCUGCCGCggUGAcACCa -3' miRNA: 3'- -UCCCGugggUUUGGCGGCGa-ACU-UGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 109679 | 0.68 | 0.770172 |
Target: 5'- cGGGGCGCgCGcGCauaGCCGuCUUGGuguggGCCg -3' miRNA: 3'- -UCCCGUGgGUuUGg--CGGC-GAACU-----UGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 109172 | 0.68 | 0.788857 |
Target: 5'- cGGGGguUCguGGCCGCCgGCUgGGACg -3' miRNA: 3'- -UCCCguGGguUUGGCGG-CGAaCUUGg -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 105552 | 0.68 | 0.788857 |
Target: 5'- cAGGGUGCCCAgcgauuccuGACUGgCGCUggcauACCu -3' miRNA: 3'- -UCCCGUGGGU---------UUGGCgGCGAacu--UGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 96425 | 0.68 | 0.797989 |
Target: 5'- cGGGgGCCC-AACCGCaguuCGUcaGGACCa -3' miRNA: 3'- uCCCgUGGGuUUGGCG----GCGaaCUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 55440 | 0.68 | 0.815788 |
Target: 5'- cGGGCGgC-AAGCCGCCGCccaUGucCCg -3' miRNA: 3'- uCCCGUgGgUUUGGCGGCGa--ACuuGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 117727 | 0.68 | 0.788857 |
Target: 5'- gAGGGUGCCCugguugacacAAugUGCCGCgcaucAACCa -3' miRNA: 3'- -UCCCGUGGG----------UUugGCGGCGaac--UUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 95057 | 0.68 | 0.788857 |
Target: 5'- uGGcGGCGCCUGAuacACCGCCGUUgcgGuGGCUa -3' miRNA: 3'- -UC-CCGUGGGUU---UGGCGGCGAa--C-UUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 128200 | 0.67 | 0.857185 |
Target: 5'- cGGGCACCCccAACCG-CGCcaagGAgggcuaGCCa -3' miRNA: 3'- uCCCGUGGGu-UUGGCgGCGaa--CU------UGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 87599 | 0.67 | 0.849291 |
Target: 5'- cGGGCuCCuCAGGgUGCUGCgagUGAGCg -3' miRNA: 3'- uCCCGuGG-GUUUgGCGGCGa--ACUUGg -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 108369 | 0.67 | 0.841197 |
Target: 5'- cGGGCGCCCcgAGAUCGCacugggugccUGCUguaaGAGCUg -3' miRNA: 3'- uCCCGUGGG--UUUGGCG----------GCGAa---CUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 133934 | 0.67 | 0.849291 |
Target: 5'- gAGGGUcCCCAGcCCGUgGCUa-GGCCa -3' miRNA: 3'- -UCCCGuGGGUUuGGCGgCGAacUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 118553 | 0.67 | 0.846077 |
Target: 5'- cGGcGCACCCAGGaacCCGgCGCggcgcaccccagGAACCc -3' miRNA: 3'- uCC-CGUGGGUUU---GGCgGCGaa----------CUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 88086 | 0.67 | 0.824438 |
Target: 5'- cGGGCacggcgccGCCCAAGCCGCaGCacGAaacacggcuuGCCg -3' miRNA: 3'- uCCCG--------UGGGUUUGGCGgCGaaCU----------UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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