Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13289 | 3' | -56 | NC_003409.1 | + | 95057 | 0.68 | 0.788857 |
Target: 5'- uGGcGGCGCCUGAuacACCGCCGUUgcgGuGGCUa -3' miRNA: 3'- -UC-CCGUGGGUU---UGGCGGCGAa--C-UUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 105552 | 0.68 | 0.788857 |
Target: 5'- cAGGGUGCCCAgcgauuccuGACUGgCGCUggcauACCu -3' miRNA: 3'- -UCCCGUGGGU---------UUGGCgGCGAacu--UGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 109172 | 0.68 | 0.788857 |
Target: 5'- cGGGGguUCguGGCCGCCgGCUgGGACg -3' miRNA: 3'- -UCCCguGGguUUGGCGG-CGAaCUUGg -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 109679 | 0.68 | 0.770172 |
Target: 5'- cGGGGCGCgCGcGCauaGCCGuCUUGGuguggGCCg -3' miRNA: 3'- -UCCCGUGgGUuUGg--CGGC-GAACU-----UGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 69294 | 0.69 | 0.760637 |
Target: 5'- uAGGGUGCCCcuaaAGACCGuCUGUUgcAACCa -3' miRNA: 3'- -UCCCGUGGG----UUUGGC-GGCGAacUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 10035 | 0.69 | 0.750987 |
Target: 5'- uGGGCugCCAGAccaaauagaguCCGCCuGUUguguggaaguacUGGACCg -3' miRNA: 3'- uCCCGugGGUUU-----------GGCGG-CGA------------ACUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 30515 | 0.69 | 0.741231 |
Target: 5'- cAGGGCucgccCCCAGuucauguuuccAUCGCCGCU--AACCu -3' miRNA: 3'- -UCCCGu----GGGUU-----------UGGCGGCGAacUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 121715 | 0.69 | 0.741231 |
Target: 5'- cAGGGCua--GAGCUGCCGCggUGAcACCa -3' miRNA: 3'- -UCCCGugggUUUGGCGGCGa-ACU-UGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 23204 | 0.69 | 0.731378 |
Target: 5'- cGGGGuCACCUccaggucaCGCCGCUaggugGGACCg -3' miRNA: 3'- -UCCC-GUGGGuuug----GCGGCGAa----CUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 119805 | 0.69 | 0.731378 |
Target: 5'- cGGGGuCACcuCCAGGuCaCGCCGCUaggugGGACCg -3' miRNA: 3'- -UCCC-GUG--GGUUU-G-GCGGCGAa----CUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 14971 | 0.69 | 0.721438 |
Target: 5'- cGaGGCACCCcuACCGUCGCgcGAgacGCUg -3' miRNA: 3'- uC-CCGUGGGuuUGGCGGCGaaCU---UGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 110009 | 0.69 | 0.71844 |
Target: 5'- cGGGCGCCaccgccucCCGCCGCggcgucuugggcggcGGACCa -3' miRNA: 3'- uCCCGUGGguuu----GGCGGCGaa-------------CUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 56339 | 0.7 | 0.71142 |
Target: 5'- -aGGCGCCaCGAcCCagaCGCUUGGACCa -3' miRNA: 3'- ucCCGUGG-GUUuGGcg-GCGAACUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 34282 | 0.7 | 0.691188 |
Target: 5'- cGGaCACCCAGGCCGC-GCUUu-GCCu -3' miRNA: 3'- uCCcGUGGGUUUGGCGgCGAAcuUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 116076 | 0.7 | 0.670756 |
Target: 5'- cAGGGCAUCCGcGGCCGCCGgacagcucCUcGAuGCCa -3' miRNA: 3'- -UCCCGUGGGU-UUGGCGGC--------GAaCU-UGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 109147 | 0.7 | 0.670756 |
Target: 5'- aGGGGCGUggAGGCUGCCGCUUGuuuCCu -3' miRNA: 3'- -UCCCGUGggUUUGGCGGCGAACuu-GG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 133102 | 0.7 | 0.660487 |
Target: 5'- uAGGGC-CCUuGGCaaGCCGCU-GGACCa -3' miRNA: 3'- -UCCCGuGGGuUUGg-CGGCGAaCUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 131698 | 0.7 | 0.660487 |
Target: 5'- cGGGCGgCCAGggacuACCGCUGCgUGGcacACCc -3' miRNA: 3'- uCCCGUgGGUU-----UGGCGGCGaACU---UGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 119957 | 0.71 | 0.629578 |
Target: 5'- -cGGCGCCCAcGCCGgCGCcUGGcacgcgGCCa -3' miRNA: 3'- ucCCGUGGGUuUGGCgGCGaACU------UGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 21938 | 0.71 | 0.619268 |
Target: 5'- aAGGGCAUCCu-GCuCGUCGCUgugcUGAcuGCCu -3' miRNA: 3'- -UCCCGUGGGuuUG-GCGGCGA----ACU--UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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