miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13291 3' -52.5 NC_003409.1 + 133710 0.67 0.930664
Target:  5'- -cGUccaCAGCAGCGUGCAGAGGGGUa -3'
miRNA:   3'- ucCGaagGUCGUCGUGCGUUUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 133268 0.68 0.900423
Target:  5'- -aGCUggUCCAGCGGCuuGCc-AAGGGCc -3'
miRNA:   3'- ucCGA--AGGUCGUCGugCGuuUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 132468 0.67 0.930664
Target:  5'- -uGCUUCCAGU-GCcaGCGUGGAGGGGUc -3'
miRNA:   3'- ucCGAAGGUCGuCG--UGCGUUUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 131110 0.76 0.492427
Target:  5'- uGGGCUUCCAGCuGCugGUGGcccuGGGUg -3'
miRNA:   3'- -UCCGAAGGUCGuCGugCGUUuu--CUCG- -5'
13291 3' -52.5 NC_003409.1 + 125152 0.67 0.935927
Target:  5'- cAGGaugagCAGCAGCA-GCAGGAuGAGCa -3'
miRNA:   3'- -UCCgaag-GUCGUCGUgCGUUUU-CUCG- -5'
13291 3' -52.5 NC_003409.1 + 125116 0.67 0.935927
Target:  5'- cAGGaugagCAGCAGCA-GCAGGAuGAGCa -3'
miRNA:   3'- -UCCgaag-GUCGUCGUgCGUUUU-CUCG- -5'
13291 3' -52.5 NC_003409.1 + 120852 0.71 0.774575
Target:  5'- cGGGUUuagaaagacuugUCCAGCAGCACcuaauccaucgGCGGucGGGCu -3'
miRNA:   3'- -UCCGA------------AGGUCGUCGUG-----------CGUUuuCUCG- -5'
13291 3' -52.5 NC_003409.1 + 120006 0.66 0.968864
Target:  5'- -cGCUUUUgucuguuggaAGCAGCuagGCGCGAcugaGAGAGCa -3'
miRNA:   3'- ucCGAAGG----------UCGUCG---UGCGUU----UUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 117674 0.73 0.671449
Target:  5'- uGGCcUCCAGCAaagcacauuuuGCACGCAAAu-GGCg -3'
miRNA:   3'- uCCGaAGGUCGU-----------CGUGCGUUUucUCG- -5'
13291 3' -52.5 NC_003409.1 + 116242 0.73 0.671449
Target:  5'- aGGaGCUgUCCGGCGGC-CGCGGAugcccuGAGCu -3'
miRNA:   3'- -UC-CGA-AGGUCGUCGuGCGUUUu-----CUCG- -5'
13291 3' -52.5 NC_003409.1 + 116146 0.7 0.847567
Target:  5'- aGGGCgcaCAGCGGguCGCAGAacaGGuGCu -3'
miRNA:   3'- -UCCGaagGUCGUCguGCGUUU---UCuCG- -5'
13291 3' -52.5 NC_003409.1 + 113181 0.68 0.919351
Target:  5'- gGGGCUUCgaaCAGCAGgucacuaACGgAAagcGAGAGCa -3'
miRNA:   3'- -UCCGAAG---GUCGUCg------UGCgUU---UUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 112428 0.66 0.962104
Target:  5'- cGGuGCUUUaauagGGCAGCcuCGCAGucGGGCg -3'
miRNA:   3'- -UC-CGAAGg----UCGUCGu-GCGUUuuCUCG- -5'
13291 3' -52.5 NC_003409.1 + 112152 0.7 0.830432
Target:  5'- cAGGCccugcaUCCGGCAcCACGCccGGGGGCc -3'
miRNA:   3'- -UCCGa-----AGGUCGUcGUGCGuuUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 111067 0.72 0.702175
Target:  5'- cGGGCUUCCGugggucaaugaccGCGGCGggcCGCAGcacGAGAGUu -3'
miRNA:   3'- -UCCGAAGGU-------------CGUCGU---GCGUU---UUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 109674 0.76 0.492427
Target:  5'- gAGGCUUCCAGCgugagguacGGCACaGCcuu-GAGCa -3'
miRNA:   3'- -UCCGAAGGUCG---------UCGUG-CGuuuuCUCG- -5'
13291 3' -52.5 NC_003409.1 + 109162 0.67 0.935927
Target:  5'- uGGCcgCCGGCuGGgACGCAGGccGGGCg -3'
miRNA:   3'- uCCGaaGGUCG-UCgUGCGUUUu-CUCG- -5'
13291 3' -52.5 NC_003409.1 + 108275 0.7 0.845892
Target:  5'- uGGGCcUCU-GCGGCGCGCAugucgcucucGAGCg -3'
miRNA:   3'- -UCCGaAGGuCGUCGUGCGUuuu-------CUCG- -5'
13291 3' -52.5 NC_003409.1 + 107800 0.66 0.953974
Target:  5'- aGGGCggcgCCugaaaaGGCuGCGCGUcgggcagAAAGGAGCg -3'
miRNA:   3'- -UCCGaa--GG------UCGuCGUGCG-------UUUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 107642 0.68 0.925138
Target:  5'- aGGGCaucCCAGuCAGCGggcCGCAGGAcGGCg -3'
miRNA:   3'- -UCCGaa-GGUC-GUCGU---GCGUUUUcUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.