Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13291 | 3' | -52.5 | NC_003409.1 | + | 133268 | 0.68 | 0.900423 |
Target: 5'- -aGCUggUCCAGCGGCuuGCc-AAGGGCc -3' miRNA: 3'- ucCGA--AGGUCGUCGugCGuuUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 67804 | 0.68 | 0.900423 |
Target: 5'- cGGUgggu-GCGGCGCGCAGGGG-GCg -3' miRNA: 3'- uCCGaagguCGUCGUGCGUUUUCuCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 64069 | 0.69 | 0.879205 |
Target: 5'- gGGGCUgugUUCAGgAGCugGCAAAGuuuuGCg -3' miRNA: 3'- -UCCGA---AGGUCgUCGugCGUUUUcu--CG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 79415 | 0.69 | 0.863844 |
Target: 5'- aAGGCUgUCCAGagcGCugGCGGcAAGAGa -3' miRNA: 3'- -UCCGA-AGGUCgu-CGugCGUU-UUCUCg -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 116146 | 0.7 | 0.847567 |
Target: 5'- aGGGCgcaCAGCGGguCGCAGAacaGGuGCu -3' miRNA: 3'- -UCCGaagGUCGUCguGCGUUU---UCuCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 84056 | 0.7 | 0.847567 |
Target: 5'- uGGCUggggaaaCCgguGGCGGUugGCAAGuuAGAGCc -3' miRNA: 3'- uCCGAa------GG---UCGUCGugCGUUU--UCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 108275 | 0.7 | 0.845892 |
Target: 5'- uGGGCcUCU-GCGGCGCGCAugucgcucucGAGCg -3' miRNA: 3'- -UCCGaAGGuCGUCGUGCGUuuu-------CUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 38804 | 0.7 | 0.839103 |
Target: 5'- uGGCaa-CGGCAGUcCGCGucAGAGCg -3' miRNA: 3'- uCCGaagGUCGUCGuGCGUuuUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 112152 | 0.7 | 0.830432 |
Target: 5'- cAGGCccugcaUCCGGCAcCACGCccGGGGGCc -3' miRNA: 3'- -UCCGa-----AGGUCGUcGUGCGuuUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 24214 | 0.7 | 0.830432 |
Target: 5'- gGGGCgcgCCAGCGGUggGC---GGGGCc -3' miRNA: 3'- -UCCGaa-GGUCGUCGugCGuuuUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 7848 | 0.7 | 0.830432 |
Target: 5'- gAGGCccguaGGCAGCugGUAGguGGGGGCa -3' miRNA: 3'- -UCCGaagg-UCGUCGugCGUU--UUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 120852 | 0.71 | 0.774575 |
Target: 5'- cGGGUUuagaaagacuugUCCAGCAGCACcuaauccaucgGCGGucGGGCu -3' miRNA: 3'- -UCCGA------------AGGUCGUCGUG-----------CGUUuuCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 33942 | 0.71 | 0.764717 |
Target: 5'- gAGGCg-CCAGCgaGGCGCGCuccuGGGGGUu -3' miRNA: 3'- -UCCGaaGGUCG--UCGUGCGuu--UUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 33028 | 0.72 | 0.75473 |
Target: 5'- gAGGCaguagCCcgccgcaaggAGCAGCcUGCAGGGGAGCa -3' miRNA: 3'- -UCCGaa---GG----------UCGUCGuGCGUUUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 69530 | 0.72 | 0.7137 |
Target: 5'- cGGGCUaaaAGCAGCA-GCcGGAGAGCg -3' miRNA: 3'- -UCCGAaggUCGUCGUgCGuUUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 111067 | 0.72 | 0.702175 |
Target: 5'- cGGGCUUCCGugggucaaugaccGCGGCGggcCGCAGcacGAGAGUu -3' miRNA: 3'- -UCCGAAGGU-------------CGUCGU---GCGUU---UUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 117674 | 0.73 | 0.671449 |
Target: 5'- uGGCcUCCAGCAaagcacauuuuGCACGCAAAu-GGCg -3' miRNA: 3'- uCCGaAGGUCGU-----------CGUGCGUUUucUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 116242 | 0.73 | 0.671449 |
Target: 5'- aGGaGCUgUCCGGCGGC-CGCGGAugcccuGAGCu -3' miRNA: 3'- -UC-CGA-AGGUCGUCGuGCGUUUu-----CUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 101707 | 0.73 | 0.671449 |
Target: 5'- cAGGCcgaugaUUCCAgGUGGCACGgGAggGAGAGCg -3' miRNA: 3'- -UCCG------AAGGU-CGUCGUGCgUU--UUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 27182 | 0.73 | 0.650071 |
Target: 5'- uAGGCcaUUCUAGgAGaCGCGCAAAGGGGg -3' miRNA: 3'- -UCCG--AAGGUCgUC-GUGCGUUUUCUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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