Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13291 | 3' | -52.5 | NC_003409.1 | + | 24300 | 0.67 | 0.935927 |
Target: 5'- cAGGagccCCGGCAGCAC-CccAGGAGCc -3' miRNA: 3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 24500 | 0.67 | 0.935927 |
Target: 5'- cAGGagccCCGGCAGCAC-CccAGGAGCc -3' miRNA: 3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 24420 | 0.67 | 0.935927 |
Target: 5'- cAGGagccCCGGCAGCAC-CccAGGAGCc -3' miRNA: 3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 24380 | 0.67 | 0.935927 |
Target: 5'- cAGGagccCCGGCAGCAC-CccAGGAGCc -3' miRNA: 3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 24340 | 0.67 | 0.935927 |
Target: 5'- cAGGagccCCGGCAGCAC-CccAGGAGCc -3' miRNA: 3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 125152 | 0.67 | 0.935927 |
Target: 5'- cAGGaugagCAGCAGCA-GCAGGAuGAGCa -3' miRNA: 3'- -UCCgaag-GUCGUCGUgCGUUUU-CUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 24460 | 0.67 | 0.935927 |
Target: 5'- cAGGagccCCGGCAGCAC-CccAGGAGCc -3' miRNA: 3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 50063 | 0.67 | 0.935927 |
Target: 5'- gAGGCgUCCGGUA-CugGCGu--GGGCg -3' miRNA: 3'- -UCCGaAGGUCGUcGugCGUuuuCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 125116 | 0.67 | 0.935927 |
Target: 5'- cAGGaugagCAGCAGCA-GCAGGAuGAGCa -3' miRNA: 3'- -UCCgaag-GUCGUCGUgCGUUUU-CUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 109162 | 0.67 | 0.935927 |
Target: 5'- uGGCcgCCGGCuGGgACGCAGGccGGGCg -3' miRNA: 3'- uCCGaaGGUCG-UCgUGCGUUUu-CUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 24260 | 0.67 | 0.930664 |
Target: 5'- gAGGagccCCGGCAGCAC-CccAGGAGCc -3' miRNA: 3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 74067 | 0.67 | 0.930664 |
Target: 5'- gAGGCUUCUGGUugGGCgaGCGCcgGGAGGAacGCg -3' miRNA: 3'- -UCCGAAGGUCG--UCG--UGCG--UUUUCU--CG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 133710 | 0.67 | 0.930664 |
Target: 5'- -cGUccaCAGCAGCGUGCAGAGGGGUa -3' miRNA: 3'- ucCGaagGUCGUCGUGCGUUUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 132468 | 0.67 | 0.930664 |
Target: 5'- -uGCUUCCAGU-GCcaGCGUGGAGGGGUc -3' miRNA: 3'- ucCGAAGGUCGuCG--UGCGUUUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 107642 | 0.68 | 0.925138 |
Target: 5'- aGGGCaucCCAGuCAGCGggcCGCAGGAcGGCg -3' miRNA: 3'- -UCCGaa-GGUC-GUCGU---GCGUUUUcUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 12501 | 0.68 | 0.925138 |
Target: 5'- cAGGC--CCAGUAGCAUGCG--GGuGUa -3' miRNA: 3'- -UCCGaaGGUCGUCGUGCGUuuUCuCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 113181 | 0.68 | 0.919351 |
Target: 5'- gGGGCUUCgaaCAGCAGgucacuaACGgAAagcGAGAGCa -3' miRNA: 3'- -UCCGAAG---GUCGUCg------UGCgUU---UUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 13631 | 0.68 | 0.919351 |
Target: 5'- uGGGUUUCaacauGGaCAGCGugucagacuuCGCGGAGGAGCu -3' miRNA: 3'- -UCCGAAGg----UC-GUCGU----------GCGUUUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 51068 | 0.68 | 0.913301 |
Target: 5'- -cGCUcUCCGGC-GUAUGCAGGAGAacGCa -3' miRNA: 3'- ucCGA-AGGUCGuCGUGCGUUUUCU--CG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 78789 | 0.68 | 0.911435 |
Target: 5'- uGGCUuggguaaaguugccUCCGGCuGGCGCGUAAcGGcaGGCg -3' miRNA: 3'- uCCGA--------------AGGUCG-UCGUGCGUUuUC--UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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