Results 41 - 45 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 13291 | 5' | -63.4 | NC_003409.1 | + | 128640 | 0.66 | 0.552104 |
|
Target: 5'- aGGCCC-CUUGGCCcaugACCUucccgcgGCCcagggaacucuuGCCGGg -3' miRNA: 3'- cCCGGGuGGACCGG----UGGA-------UGG------------CGGCC- -5' |
|||||||
| 13291 | 5' | -63.4 | NC_003409.1 | + | 130757 | 0.68 | 0.470008 |
|
Target: 5'- uGGGCCCAgCUGGgCAgC-ACCGUCc- -3' miRNA: 3'- -CCCGGGUgGACCgGUgGaUGGCGGcc -5' |
|||||||
| 13291 | 5' | -63.4 | NC_003409.1 | + | 130934 | 0.73 | 0.233171 |
|
Target: 5'- cGGCCCACUacacccagGGCCACCaGCaGCUGGa -3' miRNA: 3'- cCCGGGUGGa-------CCGGUGGaUGgCGGCC- -5' |
|||||||
| 13291 | 5' | -63.4 | NC_003409.1 | + | 133482 | 0.68 | 0.461161 |
|
Target: 5'- aGGGCCC-CCUGuGUCugU--CCGCCuGGa -3' miRNA: 3'- -CCCGGGuGGAC-CGGugGauGGCGG-CC- -5' |
|||||||
| 13291 | 5' | -63.4 | NC_003409.1 | + | 133625 | 0.7 | 0.370224 |
|
Target: 5'- gGGGCCCucaccgGCCUGuauGCCACCgaaccgGCC-CUGGg -3' miRNA: 3'- -CCCGGG------UGGAC---CGGUGGa-----UGGcGGCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home