Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13291 | 5' | -63.4 | NC_003409.1 | + | 84408 | 0.68 | 0.470008 |
Target: 5'- cGGGCguuacaaucUCGCCUGGCaaGCaCUGCC-CCGGg -3' miRNA: 3'- -CCCG---------GGUGGACCGg-UG-GAUGGcGGCC- -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 88094 | 0.66 | 0.601102 |
Target: 5'- aGGCCUACCgGGCaCGgC-GCCGCCc- -3' miRNA: 3'- cCCGGGUGGaCCG-GUgGaUGGCGGcc -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 90446 | 0.69 | 0.410035 |
Target: 5'- aGGGCUCAauc-GCCGCCUcgGCUGUCGGg -3' miRNA: 3'- -CCCGGGUggacCGGUGGA--UGGCGGCC- -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 92123 | 0.66 | 0.556862 |
Target: 5'- aGGGuCCCGguacgcgucccuguuUCUgGGCCGCCgGCCGUCGc -3' miRNA: 3'- -CCC-GGGU---------------GGA-CCGGUGGaUGGCGGCc -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 102013 | 0.67 | 0.54357 |
Target: 5'- aGGCCCGCCUGGaauCCUuuuugaGCCGa -3' miRNA: 3'- cCCGGGUGGACCgguGGAugg---CGGCc -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 107956 | 0.8 | 0.081711 |
Target: 5'- -uGCCCACCgUGGCCugCUGCaaauCGCCGGa -3' miRNA: 3'- ccCGGGUGG-ACCGGugGAUG----GCGGCC- -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 108603 | 0.68 | 0.47894 |
Target: 5'- aGGCCgGCCuccuguUGGCCACCauagACacggugGCCGGc -3' miRNA: 3'- cCCGGgUGG------ACCGGUGGa---UGg-----CGGCC- -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 108787 | 0.67 | 0.495224 |
Target: 5'- uGGGCCUGgCcGGCCACCgugucuauggugGCCaacaggagGCCGGc -3' miRNA: 3'- -CCCGGGUgGaCCGGUGGa-----------UGG--------CGGCC- -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 109750 | 0.68 | 0.435164 |
Target: 5'- uGGUCCACCUugcGGCCcCUUACUGCgGa -3' miRNA: 3'- cCCGGGUGGA---CCGGuGGAUGGCGgCc -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 110087 | 0.66 | 0.601102 |
Target: 5'- -cGCCagagcguuccugCGCCUGGCCgACCaggcGCuCGCCGGu -3' miRNA: 3'- ccCGG------------GUGGACCGG-UGGa---UG-GCGGCC- -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 111194 | 0.67 | 0.531322 |
Target: 5'- cGGGCCgCACCcgucauucgaguaaUGGCgccCACgCaACCGUCGGg -3' miRNA: 3'- -CCCGG-GUGG--------------ACCG---GUG-GaUGGCGGCC- -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 112786 | 0.68 | 0.461161 |
Target: 5'- -cGCCCGCUUGGCaagg-GCCGCgCGGg -3' miRNA: 3'- ccCGGGUGGACCGguggaUGGCG-GCC- -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 113025 | 0.67 | 0.506218 |
Target: 5'- aGGCCUcCCggaGGCCgguAUCUGCCGCCc- -3' miRNA: 3'- cCCGGGuGGa--CCGG---UGGAUGGCGGcc -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 113608 | 0.67 | 0.53414 |
Target: 5'- aGGCaCCugUUGGaCCGCCcgUCGCUGGc -3' miRNA: 3'- cCCG-GGugGACC-GGUGGauGGCGGCC- -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 113791 | 0.66 | 0.601102 |
Target: 5'- cGGCaCCAcCCUGuGCgGCCgaauCCGCCa- -3' miRNA: 3'- cCCG-GGU-GGAC-CGgUGGau--GGCGGcc -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 117839 | 0.67 | 0.540736 |
Target: 5'- cGGGgCCACgCUGGCCACucggggggacaacaCUaAUCGCCa- -3' miRNA: 3'- -CCCgGGUG-GACCGGUG--------------GA-UGGCGGcc -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 118889 | 0.68 | 0.47894 |
Target: 5'- gGGGCCCcuauaauCCUGGCCcccAUCUACUGaaaCGa -3' miRNA: 3'- -CCCGGGu------GGACCGG---UGGAUGGCg--GCc -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 119768 | 0.7 | 0.370224 |
Target: 5'- aGGGCCauccaCACUuuauguUGGCCGCgUGCCaggcGCCGGc -3' miRNA: 3'- -CCCGG-----GUGG------ACCGGUGgAUGG----CGGCC- -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 119813 | 0.66 | 0.58178 |
Target: 5'- cGGGUgCACggGGUCACCUccaggucacGCCGCUaGGu -3' miRNA: 3'- -CCCGgGUGgaCCGGUGGA---------UGGCGG-CC- -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 121553 | 0.66 | 0.562588 |
Target: 5'- aGGUCCAagcgacaaccgcCCgUGGCCACaacGCCGCCuGGu -3' miRNA: 3'- cCCGGGU------------GG-ACCGGUGga-UGGCGG-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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