Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13291 | 5' | -63.4 | NC_003409.1 | + | 23196 | 0.66 | 0.58178 |
Target: 5'- cGGGUgCACggGGUCACCUccaggucacGCCGCUaGGu -3' miRNA: 3'- -CCCGgGUGgaCCGGUGGA---------UGGCGG-CC- -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 113791 | 0.66 | 0.601102 |
Target: 5'- cGGCaCCAcCCUGuGCgGCCgaauCCGCCa- -3' miRNA: 3'- cCCG-GGU-GGAC-CGgUGGau--GGCGGcc -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 41537 | 0.66 | 0.601102 |
Target: 5'- -uGCCCAgaguccgcgcguCCgUGGCCGCgUAUCGuuGGa -3' miRNA: 3'- ccCGGGU------------GG-ACCGGUGgAUGGCggCC- -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 119768 | 0.7 | 0.370224 |
Target: 5'- aGGGCCauccaCACUuuauguUGGCCGCgUGCCaggcGCCGGc -3' miRNA: 3'- -CCCGG-----GUGG------ACCGGUGgAUGG----CGGCC- -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 113025 | 0.67 | 0.506218 |
Target: 5'- aGGCCUcCCggaGGCCgguAUCUGCCGCCc- -3' miRNA: 3'- cCCGGGuGGa--CCGG---UGGAUGGCGGcc -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 121553 | 0.66 | 0.562588 |
Target: 5'- aGGUCCAagcgacaaccgcCCgUGGCCACaacGCCGCCuGGu -3' miRNA: 3'- cCCGGGU------------GG-ACCGGUGga-UGGCGG-CC- -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 42859 | 0.66 | 0.58178 |
Target: 5'- aGGGCCC-CCUacuacuGCCACCgAgCGCCu- -3' miRNA: 3'- -CCCGGGuGGAc-----CGGUGGaUgGCGGcc -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 119813 | 0.66 | 0.58178 |
Target: 5'- cGGGUgCACggGGUCACCUccaggucacGCCGCUaGGu -3' miRNA: 3'- -CCCGgGUGgaCCGGUGGA---------UGGCGG-CC- -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 54955 | 0.66 | 0.591428 |
Target: 5'- aGGCCgGCC-GGCCACUgcagauUgGCUGGa -3' miRNA: 3'- cCCGGgUGGaCCGGUGGau----GgCGGCC- -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 113608 | 0.67 | 0.53414 |
Target: 5'- aGGCaCCugUUGGaCCGCCcgUCGCUGGc -3' miRNA: 3'- cCCG-GGugGACC-GGUGGauGGCGGCC- -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 40697 | 0.67 | 0.5332 |
Target: 5'- uGGCgCCACCgaacGGCCGCgUccaacgagcagacACCGCCa- -3' miRNA: 3'- cCCG-GGUGGa---CCGGUGgA-------------UGGCGGcc -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 108787 | 0.67 | 0.495224 |
Target: 5'- uGGGCCUGgCcGGCCACCgugucuauggugGCCaacaggagGCCGGc -3' miRNA: 3'- -CCCGGGUgGaCCGGUGGa-----------UGG--------CGGCC- -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 107956 | 0.8 | 0.081711 |
Target: 5'- -uGCCCACCgUGGCCugCUGCaaauCGCCGGa -3' miRNA: 3'- ccCGGGUGG-ACCGGugGAUG----GCGGCC- -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 24736 | 0.72 | 0.279621 |
Target: 5'- gGGGCgCGCCggGGCU-CCUgggguGCUGCCGGg -3' miRNA: 3'- -CCCGgGUGGa-CCGGuGGA-----UGGCGGCC- -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 133625 | 0.7 | 0.370224 |
Target: 5'- gGGGCCCucaccgGCCUGuauGCCACCgaaccgGCC-CUGGg -3' miRNA: 3'- -CCCGGG------UGGAC---CGGUGGa-----UGGcGGCC- -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 67977 | 0.69 | 0.393792 |
Target: 5'- aGGGCCCuCgUGGCgcccCCUGCgCGCCGc -3' miRNA: 3'- -CCCGGGuGgACCGgu--GGAUG-GCGGCc -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 43697 | 0.69 | 0.385828 |
Target: 5'- cGGa-CGCC-GGCCACCUGCUGCCc- -3' miRNA: 3'- cCCggGUGGaCCGGUGGAUGGCGGcc -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 90446 | 0.69 | 0.410035 |
Target: 5'- aGGGCUCAauc-GCCGCCUcgGCUGUCGGg -3' miRNA: 3'- -CCCGGGUggacCGGUGGA--UGGCGGCC- -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 74162 | 0.68 | 0.443736 |
Target: 5'- uGGGUguugUCGCCUcuGCCGCCguaGCCGCCGc -3' miRNA: 3'- -CCCG----GGUGGAc-CGGUGGa--UGGCGGCc -5' |
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13291 | 5' | -63.4 | NC_003409.1 | + | 23799 | 0.68 | 0.443736 |
Target: 5'- uGGGuucaCCCACCUGGguaUACCUACUggauuacccaGCUGGg -3' miRNA: 3'- -CCC----GGGUGGACCg--GUGGAUGG----------CGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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