Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 13293 | 3' | -56.2 | NC_003409.1 | + | 93157 | 0.66 | 0.867936 |
|
Target: 5'- aUGGGCccUGCACcuggcucguggagGGACGCGGGGaaucCGGa -3' miRNA: 3'- -ACCCGu-ACGUG-------------UCUGCGCUCUac--GCC- -5' |
|||||||
| 13293 | 3' | -56.2 | NC_003409.1 | + | 45917 | 0.66 | 0.868683 |
|
Target: 5'- gUGGGCuUGCcuucggugguACGG-CGCGAGGUacguucggacGCGGu -3' miRNA: 3'- -ACCCGuACG----------UGUCuGCGCUCUA----------CGCC- -5' |
|||||||
| 13293 | 3' | -56.2 | NC_003409.1 | + | 117156 | 0.66 | 0.883161 |
|
Target: 5'- uUGcGGCGcuagacUGCACcGA--CGAGAUGCGGg -3' miRNA: 3'- -AC-CCGU------ACGUGuCUgcGCUCUACGCC- -5' |
|||||||
| 13293 | 3' | -56.2 | NC_003409.1 | + | 45496 | 0.66 | 0.888017 |
|
Target: 5'- uUGGuGCGUuCGCGGugGCGgaccgcucucgcgaGGcgGCGGa -3' miRNA: 3'- -ACC-CGUAcGUGUCugCGC--------------UCuaCGCC- -5' |
|||||||
| 13293 | 3' | -56.2 | NC_003409.1 | + | 113869 | 0.66 | 0.896739 |
|
Target: 5'- uUGGGCggGC-CAGGgGgGuaggacGGUGCGGa -3' miRNA: 3'- -ACCCGuaCGuGUCUgCgCu-----CUACGCC- -5' |
|||||||
| 13293 | 3' | -56.2 | NC_003409.1 | + | 27214 | 0.66 | 0.896739 |
|
Target: 5'- uUGGGCAcGCugGgGACGUGGGAUa--- -3' miRNA: 3'- -ACCCGUaCGugU-CUGCGCUCUAcgcc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home