Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13295 | 3' | -51.2 | NC_003409.1 | + | 82899 | 0.66 | 0.991509 |
Target: 5'- gCCGUCGagaaaccgcagcCGCCGgaggccUGCAAACgcuugGGGCu -3' miRNA: 3'- aGGCAGU------------GCGGUaa----GCGUUUGa----UCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 47314 | 0.66 | 0.991509 |
Target: 5'- aCUGgggCACGCUAUUCuGCAgcAGCUGuuGGUg -3' miRNA: 3'- aGGCa--GUGCGGUAAG-CGU--UUGAU--CCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 110289 | 0.66 | 0.990784 |
Target: 5'- aCCGUCcuucguggugcgGCgGCCAgggaggcgaauggcUCGCGAuCUGGGCa -3' miRNA: 3'- aGGCAG------------UG-CGGUa-------------AGCGUUuGAUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 78206 | 0.66 | 0.990274 |
Target: 5'- aUCCG--GCGUCGUUUGCAuACaUAGGg -3' miRNA: 3'- -AGGCagUGCGGUAAGCGUuUG-AUCCg -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 24360 | 0.66 | 0.988903 |
Target: 5'- gCCG-CGCGCgCAgugCGCGAGgggGGGCu -3' miRNA: 3'- aGGCaGUGCG-GUaa-GCGUUUga-UCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 39557 | 0.66 | 0.988903 |
Target: 5'- aCCGUCaaaGCGCC----GCAuGGCUAGGUg -3' miRNA: 3'- aGGCAG---UGCGGuaagCGU-UUGAUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 55296 | 0.66 | 0.988759 |
Target: 5'- gCCGcC-CGCCAUUCGCu-ACUucucggauacaaaGGGUa -3' miRNA: 3'- aGGCaGuGCGGUAAGCGuuUGA-------------UCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 54367 | 0.66 | 0.986403 |
Target: 5'- cUCCcugCACGCCugcucugucuacCGCGAACUucAGGCu -3' miRNA: 3'- -AGGca-GUGCGGuaa---------GCGUUUGA--UCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 84902 | 0.66 | 0.986403 |
Target: 5'- aCCaGUUACGCCccUCGCGGACcccuguuuugaauGGCg -3' miRNA: 3'- aGG-CAGUGCGGuaAGCGUUUGau-----------CCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 24218 | 0.66 | 0.985715 |
Target: 5'- uUCUGgggCGCGCCAgcgGUggGCgGGGCc -3' miRNA: 3'- -AGGCa--GUGCGGUaagCGuuUGaUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 50921 | 0.67 | 0.98187 |
Target: 5'- gCCGgagaGCGUCAUcUGCGAACUaacGGGUa -3' miRNA: 3'- aGGCag--UGCGGUAaGCGUUUGA---UCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 132960 | 0.67 | 0.98187 |
Target: 5'- gCCG-CGCGCCugugCGCGuGCcAGGUa -3' miRNA: 3'- aGGCaGUGCGGuaa-GCGUuUGaUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 90678 | 0.67 | 0.98187 |
Target: 5'- cCCGUCuGCGugaCCGgcacaUCGCAAaagGCUGGGUg -3' miRNA: 3'- aGGCAG-UGC---GGUa----AGCGUU---UGAUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 35797 | 0.67 | 0.979678 |
Target: 5'- gCCGgcagaCGCGUCAaugggggaCGUggGCUGGGCg -3' miRNA: 3'- aGGCa----GUGCGGUaa------GCGuuUGAUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 119791 | 0.67 | 0.977295 |
Target: 5'- gCCG-CGUGCCAggCGCcGGCgUGGGCg -3' miRNA: 3'- aGGCaGUGCGGUaaGCGuUUG-AUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 74099 | 0.67 | 0.977295 |
Target: 5'- cUCCGUCAUGaCCGccCGgAAGCUcuucgcccgAGGCu -3' miRNA: 3'- -AGGCAGUGC-GGUaaGCgUUUGA---------UCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 109167 | 0.67 | 0.977295 |
Target: 5'- gUUCGUgGcCGCCGgcugggaCGCAGGCcGGGCg -3' miRNA: 3'- -AGGCAgU-GCGGUaa-----GCGUUUGaUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 115643 | 0.67 | 0.974712 |
Target: 5'- uUCCGgUAUGCCGcUCGCGggUgcGGUg -3' miRNA: 3'- -AGGCaGUGCGGUaAGCGUuuGauCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 81169 | 0.67 | 0.974712 |
Target: 5'- cUUCGcCGCGCCAcUCGUccgguGGAC-AGGCu -3' miRNA: 3'- -AGGCaGUGCGGUaAGCG-----UUUGaUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 10055 | 0.67 | 0.971922 |
Target: 5'- --aGUCAgGUUAaUCGCGGACaUGGGCu -3' miRNA: 3'- aggCAGUgCGGUaAGCGUUUG-AUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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