miRNA display CGI


Results 21 - 35 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13295 3' -51.2 NC_003409.1 + 47286 0.68 0.968917
Target:  5'- aUCCaucCGCGUUAggCGCAGGCUguccGGGCg -3'
miRNA:   3'- -AGGca-GUGCGGUaaGCGUUUGA----UCCG- -5'
13295 3' -51.2 NC_003409.1 + 113540 0.68 0.964677
Target:  5'- aCUGgCACGCCAUUCucgcccucgaacacGCGgugggccgucAGCUGGGCc -3'
miRNA:   3'- aGGCaGUGCGGUAAG--------------CGU----------UUGAUCCG- -5'
13295 3' -51.2 NC_003409.1 + 21362 0.68 0.962233
Target:  5'- uUCCGacacccCGCGCCGUUCGCuguucuccuguAAUUGGGa -3'
miRNA:   3'- -AGGCa-----GUGCGGUAAGCGu----------UUGAUCCg -5'
13295 3' -51.2 NC_003409.1 + 105181 0.68 0.958542
Target:  5'- cUCUGUCAgGCCGUgcUgGgGGAUUGGGUu -3'
miRNA:   3'- -AGGCAGUgCGGUA--AgCgUUUGAUCCG- -5'
13295 3' -51.2 NC_003409.1 + 14983 0.68 0.954611
Target:  5'- aCCGUCGCGCgAgaCGCugguAACUGGa- -3'
miRNA:   3'- aGGCAGUGCGgUaaGCGu---UUGAUCcg -5'
13295 3' -51.2 NC_003409.1 + 105221 0.68 0.954611
Target:  5'- gCUGUgGCGCCuggggUCGCcgggGGAgUGGGCg -3'
miRNA:   3'- aGGCAgUGCGGua---AGCG----UUUgAUCCG- -5'
13295 3' -51.2 NC_003409.1 + 84171 0.69 0.950435
Target:  5'- cCCGcUugGCUAUcUCGCAGGCcAGGUu -3'
miRNA:   3'- aGGCaGugCGGUA-AGCGUUUGaUCCG- -5'
13295 3' -51.2 NC_003409.1 + 65706 0.69 0.941333
Target:  5'- gUCCGUCugGgugggagaccCCA--CGCAGACUaugcaAGGCa -3'
miRNA:   3'- -AGGCAGugC----------GGUaaGCGUUUGA-----UCCG- -5'
13295 3' -51.2 NC_003409.1 + 111904 0.69 0.931214
Target:  5'- aCCGUCucCGCCAgggaCGCcGAUaGGGCg -3'
miRNA:   3'- aGGCAGu-GCGGUaa--GCGuUUGaUCCG- -5'
13295 3' -51.2 NC_003409.1 + 84718 0.69 0.930681
Target:  5'- cCCGUCucuGCGCCAUUCaaaacagggguccGCGAG--GGGCg -3'
miRNA:   3'- aGGCAG---UGCGGUAAG-------------CGUUUgaUCCG- -5'
13295 3' -51.2 NC_003409.1 + 59077 0.7 0.914107
Target:  5'- aCCGUCgGCGCCGacgUCGCcag--AGGCa -3'
miRNA:   3'- aGGCAG-UGCGGUa--AGCGuuugaUCCG- -5'
13295 3' -51.2 NC_003409.1 + 21491 0.71 0.880529
Target:  5'- aUCCGUCGCGUaaaugCGC-AGCU-GGCa -3'
miRNA:   3'- -AGGCAGUGCGguaa-GCGuUUGAuCCG- -5'
13295 3' -51.2 NC_003409.1 + 42763 0.71 0.880529
Target:  5'- gCUGUCugGCCAccaacUCGCAccuGC-AGGCa -3'
miRNA:   3'- aGGCAGugCGGUa----AGCGUu--UGaUCCG- -5'
13295 3' -51.2 NC_003409.1 + 117541 0.71 0.873082
Target:  5'- uUCCGUCGCGCUggUUGau-GCgcGGCa -3'
miRNA:   3'- -AGGCAGUGCGGuaAGCguuUGauCCG- -5'
13295 3' -51.2 NC_003409.1 + 40729 1.13 0.004269
Target:  5'- gUCCGUCACGCCAUUCGCAAACUAGGCu -3'
miRNA:   3'- -AGGCAGUGCGGUAAGCGUUUGAUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.