miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13296 3' -53.4 NC_003409.1 + 22405 0.66 0.957727
Target:  5'- ----cGGGuCGCCUGCGAagcGGCGCaCGCGu -3'
miRNA:   3'- aaaaaUCC-GUGGGUGCU---CUGUG-GCGC- -5'
13296 3' -53.4 NC_003409.1 + 117726 0.66 0.957341
Target:  5'- ----aGGGUGCCCugGuuGACacaauguGCCGCGc -3'
miRNA:   3'- aaaaaUCCGUGGGugCu-CUG-------UGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 87627 0.66 0.949547
Target:  5'- ----aAGGCGCUUGCGGGGCAUCa-- -3'
miRNA:   3'- aaaaaUCCGUGGGUGCUCUGUGGcgc -5'
13296 3' -53.4 NC_003409.1 + 86285 0.66 0.948235
Target:  5'- -----uGGCAaccacagccgcaauCCCAC-AGACACCGCu -3'
miRNA:   3'- aaaaauCCGU--------------GGGUGcUCUGUGGCGc -5'
13296 3' -53.4 NC_003409.1 + 113502 0.66 0.947793
Target:  5'- -----uGGCGCCCACGuauggguugugguGACGCUGUc -3'
miRNA:   3'- aaaaauCCGUGGGUGCu------------CUGUGGCGc -5'
13296 3' -53.4 NC_003409.1 + 5755 0.66 0.945088
Target:  5'- --gUUAGGUguuCCCcCGAGACACCu-- -3'
miRNA:   3'- aaaAAUCCGu--GGGuGCUCUGUGGcgc -5'
13296 3' -53.4 NC_003409.1 + 44356 0.66 0.945088
Target:  5'- uUUUUUGuGCACCCcuguccuggaGCGAGAggaucgUACCGCGc -3'
miRNA:   3'- -AAAAAUcCGUGGG----------UGCUCU------GUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 8918 0.66 0.940377
Target:  5'- ----aAGGUgucACCCcuCGAGuGCGCCGCGc -3'
miRNA:   3'- aaaaaUCCG---UGGGu-GCUC-UGUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 118375 0.67 0.935414
Target:  5'- -----cGGguUCCugGGGuGCGCCGCGc -3'
miRNA:   3'- aaaaauCCguGGGugCUC-UGUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 118329 0.67 0.935414
Target:  5'- -----cGGguUCCugGGGuGCGCCGCGc -3'
miRNA:   3'- aaaaauCCguGGGugCUC-UGUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 118352 0.67 0.935414
Target:  5'- -----cGGguUCCugGGGuGCGCCGCGc -3'
miRNA:   3'- aaaaauCCguGGGugCUC-UGUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 118398 0.67 0.935414
Target:  5'- -----cGGguUCCugGGGuGCGCCGCGc -3'
miRNA:   3'- aaaaauCCguGGGugCUC-UGUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 118421 0.67 0.935414
Target:  5'- -----cGGguUCCugGGGuGCGCCGCGc -3'
miRNA:   3'- aaaaauCCguGGGugCUC-UGUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 118444 0.67 0.935414
Target:  5'- -----cGGguUCCugGGGuGCGCCGCGc -3'
miRNA:   3'- aaaaauCCguGGGugCUC-UGUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 104698 0.67 0.935414
Target:  5'- ------cGCGCCCGCGcAGACcUCGCGu -3'
miRNA:   3'- aaaaaucCGUGGGUGC-UCUGuGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 32779 0.67 0.930196
Target:  5'- ----gGGGuCACCCACGAcguucGCAUCGCc -3'
miRNA:   3'- aaaaaUCC-GUGGGUGCUc----UGUGGCGc -5'
13296 3' -53.4 NC_003409.1 + 53136 0.67 0.930196
Target:  5'- ------cGCGCCC-CGGGACggGCCGCa -3'
miRNA:   3'- aaaaaucCGUGGGuGCUCUG--UGGCGc -5'
13296 3' -53.4 NC_003409.1 + 109826 0.67 0.930196
Target:  5'- -gUUUGGuccgcCGCCCA--AGACGCCGCGg -3'
miRNA:   3'- aaAAAUCc----GUGGGUgcUCUGUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 132642 0.67 0.924722
Target:  5'- ----gGGGUGCCC-CGAGACGCgGaCa -3'
miRNA:   3'- aaaaaUCCGUGGGuGCUCUGUGgC-Gc -5'
13296 3' -53.4 NC_003409.1 + 131673 0.67 0.918993
Target:  5'- -----uGGCacACCCACuGGGCACCGUu -3'
miRNA:   3'- aaaaauCCG--UGGGUGcUCUGUGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.