Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13302 | 5' | -53.2 | NC_003409.1 | + | 123491 | 0.66 | 0.964734 |
Target: 5'- aGGGUGCUCuGucagguuCUCCCAUCGacGAcgcugGGCCg -3' miRNA: 3'- -CUCAUGAGuCu------GAGGGUGGU--CU-----UCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 102855 | 0.66 | 0.964734 |
Target: 5'- --cUGC-CAGGCgCCCGCUAGccaGAGCCu -3' miRNA: 3'- cucAUGaGUCUGaGGGUGGUC---UUCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 90659 | 0.66 | 0.964734 |
Target: 5'- aGAGUcCUCAGAUUCCgCGCCcGucuGCg -3' miRNA: 3'- -CUCAuGAGUCUGAGG-GUGGuCuu-CGg -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 7186 | 0.66 | 0.964395 |
Target: 5'- -uGUG-UCuGACUCCCaACCAGGgcaccagucugcaGGCCa -3' miRNA: 3'- cuCAUgAGuCUGAGGG-UGGUCU-------------UCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 90322 | 0.66 | 0.964054 |
Target: 5'- uGGUGCU-GGACUgCCGCCGGcguccagacgccGGCCa -3' miRNA: 3'- cUCAUGAgUCUGAgGGUGGUCu-----------UCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 107973 | 0.66 | 0.961241 |
Target: 5'- aGGGaGCUCcagGGGCgugCCCACCGu-GGCCu -3' miRNA: 3'- -CUCaUGAG---UCUGa--GGGUGGUcuUCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 110460 | 0.66 | 0.961241 |
Target: 5'- cAGUucGC-CAGACUCCUucagaGCCAGGugagcGCCa -3' miRNA: 3'- cUCA--UGaGUCUGAGGG-----UGGUCUu----CGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 79081 | 0.66 | 0.961241 |
Target: 5'- cGGU-CUCcuGGCagCCCGCCGGAauuuuAGCCa -3' miRNA: 3'- cUCAuGAGu-CUGa-GGGUGGUCU-----UCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 42118 | 0.66 | 0.961241 |
Target: 5'- aGAGaUGCUuCAGGCUCU--CCAGGAGUg -3' miRNA: 3'- -CUC-AUGA-GUCUGAGGguGGUCUUCGg -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 107657 | 0.66 | 0.957515 |
Target: 5'- uGGUACUCcgcugccaGGGCaUCCCAgUCAGcGGGCCg -3' miRNA: 3'- cUCAUGAG--------UCUG-AGGGU-GGUC-UUCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 78553 | 0.66 | 0.957515 |
Target: 5'- ---cACUCgAGcCUCCCggaaacggacGCCAGGAGCUa -3' miRNA: 3'- cucaUGAG-UCuGAGGG----------UGGUCUUCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 85537 | 0.66 | 0.957515 |
Target: 5'- ---cACUgCAGGgUCCCGCCuauAGCCa -3' miRNA: 3'- cucaUGA-GUCUgAGGGUGGucuUCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 95663 | 0.66 | 0.953552 |
Target: 5'- aGAGgcGCUCAGACUCgaGCCAGu--CCa -3' miRNA: 3'- -CUCa-UGAGUCUGAGggUGGUCuucGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 65366 | 0.66 | 0.948913 |
Target: 5'- ----uUUCAGACUCCUuuGCCGuauggguGGAGCCa -3' miRNA: 3'- cucauGAGUCUGAGGG--UGGU-------CUUCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 35995 | 0.67 | 0.940196 |
Target: 5'- gGGGUcCUCuuGAgUCCCugCAGAuccGCCc -3' miRNA: 3'- -CUCAuGAGu-CUgAGGGugGUCUu--CGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 102291 | 0.67 | 0.930042 |
Target: 5'- cGGUGCcUGGGCagcuacagUCCCACCGGcuuGGCCu -3' miRNA: 3'- cUCAUGaGUCUG--------AGGGUGGUCu--UCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 63303 | 0.67 | 0.930042 |
Target: 5'- uGAGUACUCaugccccgaAGACUCgCGagUCAGAagaGGCCu -3' miRNA: 3'- -CUCAUGAG---------UCUGAGgGU--GGUCU---UCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 87667 | 0.67 | 0.929508 |
Target: 5'- -uGUGCUCGcgcguGGCUucCCCGCCGGGAaaccgguGCCg -3' miRNA: 3'- cuCAUGAGU-----CUGA--GGGUGGUCUU-------CGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 96417 | 0.68 | 0.906699 |
Target: 5'- --cUGCcuUCcguGugUCCCACCAGggGCg -3' miRNA: 3'- cucAUG--AGu--CugAGGGUGGUCuuCGg -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 64346 | 0.68 | 0.900236 |
Target: 5'- uGAGUAUcCGGcCUaugguuuuUUCACCAGAGGCCa -3' miRNA: 3'- -CUCAUGaGUCuGA--------GGGUGGUCUUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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