Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13302 | 5' | -53.2 | NC_003409.1 | + | 50029 | 1.12 | 0.002747 |
Target: 5'- cGAGUACUCAGACUCCCACCAGAAGCCu -3' miRNA: 3'- -CUCAUGAGUCUGAGGGUGGUCUUCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 22516 | 0.74 | 0.612679 |
Target: 5'- cAGUGC-CAGAUUgCCACCGGAuaAGCUg -3' miRNA: 3'- cUCAUGaGUCUGAgGGUGGUCU--UCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 110032 | 0.73 | 0.644279 |
Target: 5'- gGGGUACgguggCAGugUUgCGCCGGgcGCCa -3' miRNA: 3'- -CUCAUGa----GUCugAGgGUGGUCuuCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 40342 | 0.72 | 0.72741 |
Target: 5'- cGGG-ACUUcaggauuagAGACUCCCACCAu-GGCCg -3' miRNA: 3'- -CUCaUGAG---------UCUGAGGGUGGUcuUCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 63157 | 0.7 | 0.804952 |
Target: 5'- uGAGUACUCAuuGGCacuccagucagUCUCGCCAG-GGCCc -3' miRNA: 3'- -CUCAUGAGU--CUG-----------AGGGUGGUCuUCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 82615 | 0.7 | 0.813999 |
Target: 5'- ---aACUCAGACUCCCugCG--AGCa -3' miRNA: 3'- cucaUGAGUCUGAGGGugGUcuUCGg -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 125475 | 0.7 | 0.840056 |
Target: 5'- --cUGCUguGGCUCCCGCUgcuGggGCUc -3' miRNA: 3'- cucAUGAguCUGAGGGUGGu--CuuCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 80559 | 0.7 | 0.804038 |
Target: 5'- ---cGCUCgccuacaAGACUCCCGCCAaaauAGCCg -3' miRNA: 3'- cucaUGAG-------UCUGAGGGUGGUcu--UCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 132142 | 0.69 | 0.856439 |
Target: 5'- uGGUcCUCuGGACUCCaCGCCAcGgcGCCa -3' miRNA: 3'- cUCAuGAG-UCUGAGG-GUGGU-CuuCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 13496 | 0.69 | 0.864312 |
Target: 5'- aGAGauCUCAGGC-CUUugUAGAGGCCa -3' miRNA: 3'- -CUCauGAGUCUGaGGGugGUCUUCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 113935 | 0.69 | 0.871962 |
Target: 5'- uGGUGC-CGGuuUUCCCACCAacGGCCg -3' miRNA: 3'- cUCAUGaGUCu-GAGGGUGGUcuUCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 49884 | 0.68 | 0.900236 |
Target: 5'- uGAGUACUCGuGACaacgcgCCCacgccaguACCGGAcGCCu -3' miRNA: 3'- -CUCAUGAGU-CUGa-----GGG--------UGGUCUuCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 64346 | 0.68 | 0.900236 |
Target: 5'- uGAGUAUcCGGcCUaugguuuuUUCACCAGAGGCCa -3' miRNA: 3'- -CUCAUGaGUCuGA--------GGGUGGUCUUCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 96417 | 0.68 | 0.906699 |
Target: 5'- --cUGCcuUCcguGugUCCCACCAGggGCg -3' miRNA: 3'- cucAUG--AGu--CugAGGGUGGUCuuCGg -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 107256 | 0.68 | 0.893527 |
Target: 5'- --cUGCaaCAGGCUCCCACCGcGAAGgCu -3' miRNA: 3'- cucAUGa-GUCUGAGGGUGGU-CUUCgG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 70749 | 0.68 | 0.900236 |
Target: 5'- aGAGUAUggCGGACUgucaCCCACCcgcccaugggcAGAGGCa -3' miRNA: 3'- -CUCAUGa-GUCUGA----GGGUGG-----------UCUUCGg -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 35995 | 0.67 | 0.940196 |
Target: 5'- gGGGUcCUCuuGAgUCCCugCAGAuccGCCc -3' miRNA: 3'- -CUCAuGAGu-CUgAGGGugGUCUu--CGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 63303 | 0.67 | 0.930042 |
Target: 5'- uGAGUACUCaugccccgaAGACUCgCGagUCAGAagaGGCCu -3' miRNA: 3'- -CUCAUGAG---------UCUGAGgGU--GGUCU---UCGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 87667 | 0.67 | 0.929508 |
Target: 5'- -uGUGCUCGcgcguGGCUucCCCGCCGGGAaaccgguGCCg -3' miRNA: 3'- cuCAUGAGU-----CUGA--GGGUGGUCUU-------CGG- -5' |
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13302 | 5' | -53.2 | NC_003409.1 | + | 102291 | 0.67 | 0.930042 |
Target: 5'- cGGUGCcUGGGCagcuacagUCCCACCGGcuuGGCCu -3' miRNA: 3'- cUCAUGaGUCUG--------AGGGUGGUCu--UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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