Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13304 | 3' | -57.5 | NC_003409.1 | + | 51472 | 0.66 | 0.844401 |
Target: 5'- cUUUUCCACcuACACCcgguUCAGCCGGUcgccaGGGu -3' miRNA: 3'- -AAAGGGUG--UGUGGu---GGUUGGCCG-----CCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 87194 | 0.66 | 0.844401 |
Target: 5'- --gCCgACGCGCCACCcugCGuGUGGGa -3' miRNA: 3'- aaaGGgUGUGUGGUGGuugGC-CGCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 119774 | 0.66 | 0.844401 |
Target: 5'- --aUCCACACuuuauguugGCCgcguGCCAggcGCCGGCGuGGg -3' miRNA: 3'- aaaGGGUGUG---------UGG----UGGU---UGGCCGC-CC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 41769 | 0.66 | 0.836271 |
Target: 5'- -aUCCggUACGCGCCGaaaGACCGGCGa- -3' miRNA: 3'- aaAGG--GUGUGUGGUgg-UUGGCCGCcc -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 18039 | 0.66 | 0.836271 |
Target: 5'- -cUCCCGCucggGCACCACCGGCUaGUGu- -3' miRNA: 3'- aaAGGGUG----UGUGGUGGUUGGcCGCcc -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 81169 | 0.66 | 0.836271 |
Target: 5'- cUUCgC-CGCGCCACUcguCCGGUGGa -3' miRNA: 3'- aAAGgGuGUGUGGUGGuu-GGCCGCCc -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 27100 | 0.66 | 0.825427 |
Target: 5'- uUUUCCCagaaGCGCACCACagaaacGCCugucguacgcggggGGUGGGg -3' miRNA: 3'- -AAAGGG----UGUGUGGUGgu----UGG--------------CCGCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 22342 | 0.66 | 0.819464 |
Target: 5'- --aCCCGCAUAUCAgCuuauCCGGUGGc -3' miRNA: 3'- aaaGGGUGUGUGGUgGuu--GGCCGCCc -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 27942 | 0.66 | 0.819464 |
Target: 5'- -gUCCCuccaguGCACGCCGCUA---GGUGGGa -3' miRNA: 3'- aaAGGG------UGUGUGGUGGUuggCCGCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 24372 | 0.66 | 0.810802 |
Target: 5'- -gUCCCACGUGCCGCCGcgcgcgcagugcGCgaGGgGGGg -3' miRNA: 3'- aaAGGGUGUGUGGUGGU------------UGg-CCgCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 95935 | 0.66 | 0.801979 |
Target: 5'- --gCCCACugGCUGCCAAUCaGGUGa- -3' miRNA: 3'- aaaGGGUGugUGGUGGUUGG-CCGCcc -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 127030 | 0.66 | 0.801979 |
Target: 5'- -cUCCCGCaACACCuuuACCuccACCGGCa-- -3' miRNA: 3'- aaAGGGUG-UGUGG---UGGu--UGGCCGccc -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 60298 | 0.66 | 0.801979 |
Target: 5'- -cUCCCGcCGCAgCGCCGcCUGGCGa- -3' miRNA: 3'- aaAGGGU-GUGUgGUGGUuGGCCGCcc -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 35408 | 0.67 | 0.793003 |
Target: 5'- --gCCCAcCugGCCACCuaccGCCGGCu-- -3' miRNA: 3'- aaaGGGU-GugUGGUGGu---UGGCCGccc -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 132928 | 0.67 | 0.792098 |
Target: 5'- -cUgCCAC-CGCCGCCuucacggcauccgGACCGGCcgcGGGa -3' miRNA: 3'- aaAgGGUGuGUGGUGG-------------UUGGCCG---CCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 133220 | 0.67 | 0.783883 |
Target: 5'- --gCCCagACACACCACUgucuGCUGG-GGGa -3' miRNA: 3'- aaaGGG--UGUGUGGUGGu---UGGCCgCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 31070 | 0.67 | 0.783883 |
Target: 5'- ---aCCACGCAUaCACCAuGCgCGGCGGu -3' miRNA: 3'- aaagGGUGUGUG-GUGGU-UG-GCCGCCc -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 33903 | 0.67 | 0.783883 |
Target: 5'- aUUUUCCGCAUACCAgUggAACCugcgaGCGGGg -3' miRNA: 3'- -AAAGGGUGUGUGGUgG--UUGGc----CGCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 133182 | 0.67 | 0.774626 |
Target: 5'- --gCgCugGCGCCGCgGACCGGCcuGGa -3' miRNA: 3'- aaaGgGugUGUGGUGgUUGGCCGc-CC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 40362 | 0.67 | 0.774626 |
Target: 5'- -cUCCCACcaugGCCGCCAccGCCGGagaGGu -3' miRNA: 3'- aaAGGGUGug--UGGUGGU--UGGCCg--CCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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