Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13306 | 5' | -61.7 | NC_003409.1 | + | 95187 | 0.66 | 0.640386 |
Target: 5'- aCAGCAGCaaacacugcugaCGCGCaGAUCCauuccaGCCUCCGGu -3' miRNA: 3'- -GUCGUCG------------GUGUGgCUAGG------CGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 107506 | 0.66 | 0.640386 |
Target: 5'- uGGCAGCggaguaccaACGCCGugGUUCGCCCCUu- -3' miRNA: 3'- gUCGUCGg--------UGUGGC--UAGGCGGGGGcu -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 9777 | 0.66 | 0.610603 |
Target: 5'- cCAGCGGacaCACGCCGugGUCuUGCUCUCGGa -3' miRNA: 3'- -GUCGUCg--GUGUGGC--UAG-GCGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 24828 | 0.66 | 0.600696 |
Target: 5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3' miRNA: 3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 24768 | 0.66 | 0.600696 |
Target: 5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3' miRNA: 3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 24798 | 0.66 | 0.600696 |
Target: 5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3' miRNA: 3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 25008 | 0.66 | 0.600696 |
Target: 5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3' miRNA: 3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 24978 | 0.66 | 0.600696 |
Target: 5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3' miRNA: 3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 24948 | 0.66 | 0.600696 |
Target: 5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3' miRNA: 3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 24918 | 0.66 | 0.600696 |
Target: 5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3' miRNA: 3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 24888 | 0.66 | 0.600696 |
Target: 5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3' miRNA: 3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 24858 | 0.66 | 0.600696 |
Target: 5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3' miRNA: 3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 75287 | 0.66 | 0.600696 |
Target: 5'- aAGgGGUgACGCCGucccagCCGCCCCUa- -3' miRNA: 3'- gUCgUCGgUGUGGCua----GGCGGGGGcu -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 55988 | 0.67 | 0.590811 |
Target: 5'- aGGUggaGGCUugA-CGAUuuGCCCCCGGu -3' miRNA: 3'- gUCG---UCGGugUgGCUAggCGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 110023 | 0.67 | 0.561351 |
Target: 5'- uGGCAGUguUGCGCCGGgcgccaCCGCCuCCCGc -3' miRNA: 3'- gUCGUCG--GUGUGGCUa-----GGCGG-GGGCu -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 26787 | 0.67 | 0.558425 |
Target: 5'- aCGGCGcGCCcCGCCcuuccuucccuccgGAUCCGCCCacaCCGGa -3' miRNA: 3'- -GUCGU-CGGuGUGG--------------CUAGGCGGG---GGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 127888 | 0.68 | 0.532307 |
Target: 5'- aGGCAGCUGCGCCacgaagcaGUCaCGUCCCCa- -3' miRNA: 3'- gUCGUCGGUGUGGc-------UAG-GCGGGGGcu -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 134495 | 0.68 | 0.522743 |
Target: 5'- uCGGCAGCCugACUacaGAgggUGUCCCCGGg -3' miRNA: 3'- -GUCGUCGGugUGG---CUag-GCGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 52846 | 0.68 | 0.513246 |
Target: 5'- aUAGCGGCCucgaaugaACACCaGAUCCuCCUUCGAc -3' miRNA: 3'- -GUCGUCGG--------UGUGG-CUAGGcGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 82664 | 0.68 | 0.503821 |
Target: 5'- gCAGC-GCgACACUG-UCCGCCCCg-- -3' miRNA: 3'- -GUCGuCGgUGUGGCuAGGCGGGGgcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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