miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13307 5' -52.5 NC_003409.1 + 31672 0.66 0.97284
Target:  5'- gGCCAGGCcuaauggggugugggGGCCAGAuguucccCAC-CGAc -3'
miRNA:   3'- aUGGUCCG---------------CCGGUCUuuuu---GUGuGCU- -5'
13307 5' -52.5 NC_003409.1 + 78721 0.66 0.971686
Target:  5'- -uCCAGGguugacgaaGGCCGGGGAggGAUugACGAa -3'
miRNA:   3'- auGGUCCg--------CCGGUCUUU--UUGugUGCU- -5'
13307 5' -52.5 NC_003409.1 + 119986 0.66 0.971686
Target:  5'- aGCUAGGCGcGaCUgAGAGAGcacGCGCGCGGc -3'
miRNA:   3'- aUGGUCCGC-C-GG-UCUUUU---UGUGUGCU- -5'
13307 5' -52.5 NC_003409.1 + 134199 0.66 0.971686
Target:  5'- cAUCAGGCGGUCugugccacGGggGAGCGaGCGu -3'
miRNA:   3'- aUGGUCCGCCGG--------UCuuUUUGUgUGCu -5'
13307 5' -52.5 NC_003409.1 + 33983 0.66 0.971686
Target:  5'- --aCGGGCGcGCCAGGGAcAGCGCcCGc -3'
miRNA:   3'- augGUCCGC-CGGUCUUU-UUGUGuGCu -5'
13307 5' -52.5 NC_003409.1 + 37959 0.66 0.968647
Target:  5'- gGCCAGGCGcGCCugcgcagcucaAGAGGcGGCGC-CGGa -3'
miRNA:   3'- aUGGUCCGC-CGG-----------UCUUU-UUGUGuGCU- -5'
13307 5' -52.5 NC_003409.1 + 68528 0.66 0.968331
Target:  5'- cGCUAGG-GG-CGGAAAuuuacaaAGCACACGAg -3'
miRNA:   3'- aUGGUCCgCCgGUCUUU-------UUGUGUGCU- -5'
13307 5' -52.5 NC_003409.1 + 45889 0.66 0.965382
Target:  5'- cGCCcgGGGUGGCCuGAcAAGACGCggcauacgccGCGAc -3'
miRNA:   3'- aUGG--UCCGCCGGuCU-UUUUGUG----------UGCU- -5'
13307 5' -52.5 NC_003409.1 + 79762 0.66 0.961886
Target:  5'- aGCCAGGUGGCCuGGcu--CAgaACGAa -3'
miRNA:   3'- aUGGUCCGCCGGuCUuuuuGUg-UGCU- -5'
13307 5' -52.5 NC_003409.1 + 18280 0.66 0.961886
Target:  5'- cACCAGGgGGCgGGGuuucuAACGUGCGAc -3'
miRNA:   3'- aUGGUCCgCCGgUCUuu---UUGUGUGCU- -5'
13307 5' -52.5 NC_003409.1 + 20795 0.66 0.961886
Target:  5'- gGCCGGGCgcGGCCu----GGCGCACa- -3'
miRNA:   3'- aUGGUCCG--CCGGucuuuUUGUGUGcu -5'
13307 5' -52.5 NC_003409.1 + 121374 0.66 0.958153
Target:  5'- cACCAGGCGGCguugu-GGC-CACGGg -3'
miRNA:   3'- aUGGUCCGCCGgucuuuUUGuGUGCU- -5'
13307 5' -52.5 NC_003409.1 + 47096 0.66 0.958153
Target:  5'- gACUgaaGGGCGGCCAGuucaucagcGAAGAguCugGAg -3'
miRNA:   3'- aUGG---UCCGCCGGUC---------UUUUUguGugCU- -5'
13307 5' -52.5 NC_003409.1 + 119796 0.67 0.954176
Target:  5'- gUGCCAGGCgccGGCguGGGcgccGCGCGCGu -3'
miRNA:   3'- -AUGGUCCG---CCGguCUUuu--UGUGUGCu -5'
13307 5' -52.5 NC_003409.1 + 32146 0.67 0.954176
Target:  5'- aGCCuGGauGCCAGcucuagGAAGGCugGCGAc -3'
miRNA:   3'- aUGGuCCgcCGGUC------UUUUUGugUGCU- -5'
13307 5' -52.5 NC_003409.1 + 10493 0.67 0.949951
Target:  5'- cACCAGGgGGCgCGcgu-AACACACGu -3'
miRNA:   3'- aUGGUCCgCCG-GUcuuuUUGUGUGCu -5'
13307 5' -52.5 NC_003409.1 + 132679 0.67 0.940743
Target:  5'- aGCCAGGgGGaCGGggGggUGgACGAc -3'
miRNA:   3'- aUGGUCCgCCgGUCuuUuuGUgUGCU- -5'
13307 5' -52.5 NC_003409.1 + 101695 0.67 0.940743
Target:  5'- -uCCAGGUGGCaCGGGAGGGagaGCGGg -3'
miRNA:   3'- auGGUCCGCCG-GUCUUUUUgugUGCU- -5'
13307 5' -52.5 NC_003409.1 + 45626 0.67 0.935755
Target:  5'- cACCAGGCuccccaaCCAGAGAAACGCGg-- -3'
miRNA:   3'- aUGGUCCGcc-----GGUCUUUUUGUGUgcu -5'
13307 5' -52.5 NC_003409.1 + 62910 0.67 0.935755
Target:  5'- uUAUuuGuCGcGCCAGAAAGACACAUGAg -3'
miRNA:   3'- -AUGguCcGC-CGGUCUUUUUGUGUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.