miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13311 3' -53.5 NC_003409.1 + 31826 0.69 0.830077
Target:  5'- cGGCAUccaAGCcGUCACACCAcccagacCAGCCa -3'
miRNA:   3'- uCUGUG---UCGaCAGUGUGGUu------GUCGGg -5'
13311 3' -53.5 NC_003409.1 + 119228 0.68 0.892387
Target:  5'- aAGGCAaccuCAGCUGggaAUACCAGCGGacuaccCCCa -3'
miRNA:   3'- -UCUGU----GUCGACag-UGUGGUUGUC------GGG- -5'
13311 3' -53.5 NC_003409.1 + 97262 0.68 0.885391
Target:  5'- gGGACG-AGCUGcugCACACCAA-GGCCg -3'
miRNA:   3'- -UCUGUgUCGACa--GUGUGGUUgUCGGg -5'
13311 3' -53.5 NC_003409.1 + 114583 0.68 0.885391
Target:  5'- uGACuGCGGgUGUCGCGCUuuGGgGGCCUg -3'
miRNA:   3'- uCUG-UGUCgACAGUGUGG--UUgUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 119961 0.68 0.878156
Target:  5'- -cGCGCGGCgccCACGCCGGC-GCCUg -3'
miRNA:   3'- ucUGUGUCGacaGUGUGGUUGuCGGG- -5'
13311 3' -53.5 NC_003409.1 + 71962 0.68 0.878156
Target:  5'- ---gACAGCUGUCGuucagaugUACCAGCGGUgCa -3'
miRNA:   3'- ucugUGUCGACAGU--------GUGGUUGUCGgG- -5'
13311 3' -53.5 NC_003409.1 + 26110 0.69 0.862995
Target:  5'- gGGugACcguaCUGcCAUACCGACGGCCg -3'
miRNA:   3'- -UCugUGuc--GACaGUGUGGUUGUCGGg -5'
13311 3' -53.5 NC_003409.1 + 101376 0.69 0.862995
Target:  5'- ---uGCuGCUGUUuaagagggcagGCACCGGCAGUCCu -3'
miRNA:   3'- ucugUGuCGACAG-----------UGUGGUUGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 95732 0.69 0.855079
Target:  5'- aGGACGCuGCcucUGUC--ACCAGCuGCCCc -3'
miRNA:   3'- -UCUGUGuCG---ACAGugUGGUUGuCGGG- -5'
13311 3' -53.5 NC_003409.1 + 133634 0.68 0.895118
Target:  5'- cAGACACAGggggcccucaccggcCUGUaugcCACCGAacCGGCCCu -3'
miRNA:   3'- -UCUGUGUC---------------GACAgu--GUGGUU--GUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 96074 0.68 0.899142
Target:  5'- uGGGCGUGGUg--CACACCGAC-GCCCu -3'
miRNA:   3'- -UCUGUGUCGacaGUGUGGUUGuCGGG- -5'
13311 3' -53.5 NC_003409.1 + 99602 0.67 0.91191
Target:  5'- cGGACAacucgcCAGCUGUUuauUCuGCAGCCCu -3'
miRNA:   3'- -UCUGU------GUCGACAGuguGGuUGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 22586 0.66 0.952902
Target:  5'- uGAUugAGCUaugUGCgGCCAGCGGUCCu -3'
miRNA:   3'- uCUGugUCGAca-GUG-UGGUUGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 60859 0.66 0.956517
Target:  5'- uAGAUAgAGCUGUgCcacguuccgguggACGCCGcgGGCCCg -3'
miRNA:   3'- -UCUGUgUCGACA-G-------------UGUGGUugUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 53374 0.66 0.952902
Target:  5'- aAGA-ACAGCaGcCACACCGAUccGCCCc -3'
miRNA:   3'- -UCUgUGUCGaCaGUGUGGUUGu-CGGG- -5'
13311 3' -53.5 NC_003409.1 + 10041 0.66 0.948655
Target:  5'- cGGACAUgGGCUGcCAgACCAAauagAGUCCg -3'
miRNA:   3'- -UCUGUG-UCGACaGUgUGGUUg---UCGGG- -5'
13311 3' -53.5 NC_003409.1 + 49877 0.66 0.939418
Target:  5'- -aACGCGGCgGUCgaagGCAaCAGCAGCCa -3'
miRNA:   3'- ucUGUGUCGaCAG----UGUgGUUGUCGGg -5'
13311 3' -53.5 NC_003409.1 + 85319 0.66 0.939418
Target:  5'- cGGCAUAGCUGUgCuuACCAcuggacauuGCGGCgCg -3'
miRNA:   3'- uCUGUGUCGACA-GugUGGU---------UGUCGgG- -5'
13311 3' -53.5 NC_003409.1 + 50170 0.67 0.934423
Target:  5'- uGACACAGUuugacaugUGUCggguagACACC-ACcGCCCa -3'
miRNA:   3'- uCUGUGUCG--------ACAG------UGUGGuUGuCGGG- -5'
13311 3' -53.5 NC_003409.1 + 109856 0.67 0.917918
Target:  5'- aAGugACGGCc--CACACCAagACGGCUa -3'
miRNA:   3'- -UCugUGUCGacaGUGUGGU--UGUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.