miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13322 5' -53.3 NC_003409.1 + 80584 1.08 0.005105
Target:  5'- uGACUGCCCGCACCAAUAAACGCACCGc -3'
miRNA:   3'- -CUGACGGGCGUGGUUAUUUGCGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 101826 0.76 0.507515
Target:  5'- --aUGCCCGUAuCCAAaGAACGCGCCc -3'
miRNA:   3'- cugACGGGCGU-GGUUaUUUGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 88266 0.73 0.642321
Target:  5'- aGGCUGCCUGCuccguguggauACCAGUGAaugaggGCGCAUCu -3'
miRNA:   3'- -CUGACGGGCG-----------UGGUUAUU------UGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 102443 0.71 0.745739
Target:  5'- aGCUGCCCagGCACCGGUAGAaauaGUGuCCGa -3'
miRNA:   3'- cUGACGGG--CGUGGUUAUUUg---CGU-GGC- -5'
13322 5' -53.3 NC_003409.1 + 118315 0.71 0.765474
Target:  5'- gGGgUGCgCCGCGCCGGguuccugGggUGCGCCGc -3'
miRNA:   3'- -CUgACG-GGCGUGGUUa------UuuGCGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 121361 0.71 0.765474
Target:  5'- uACUGCCCGguucCACCAGgcGGCGUugUGg -3'
miRNA:   3'- cUGACGGGC----GUGGUUauUUGCGugGC- -5'
13322 5' -53.3 NC_003409.1 + 73599 0.71 0.765474
Target:  5'- -cCUGCCaCGUACUAAUAAACGC-CgGg -3'
miRNA:   3'- cuGACGG-GCGUGGUUAUUUGCGuGgC- -5'
13322 5' -53.3 NC_003409.1 + 111326 0.71 0.765474
Target:  5'- --gUGCCCGCcguuACCccaAGGCGCACCGu -3'
miRNA:   3'- cugACGGGCG----UGGuuaUUUGCGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 118361 0.71 0.765474
Target:  5'- gGGgUGCgCCGCGCCGGguuccugGggUGCGCCGc -3'
miRNA:   3'- -CUgACG-GGCGUGGUUa------UuuGCGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 118407 0.71 0.765474
Target:  5'- gGGgUGCgCCGCGCCGGguuccugGggUGCGCCGc -3'
miRNA:   3'- -CUgACG-GGCGUGGUUa------UuuGCGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 38261 0.69 0.854276
Target:  5'- uGCUGgCCaugguccagcuugGCGCCcGUGAugGCGCCGu -3'
miRNA:   3'- cUGACgGG-------------CGUGGuUAUUugCGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 45659 0.69 0.855079
Target:  5'- aGCgGUCCGcCACCGc-GAACGCACCa -3'
miRNA:   3'- cUGaCGGGC-GUGGUuaUUUGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 19137 0.69 0.855079
Target:  5'- --aUGCCCGCcCCAcguGGCGCAUCa -3'
miRNA:   3'- cugACGGGCGuGGUuauUUGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 27833 0.68 0.885391
Target:  5'- cGGCgcaGgCCGCACCGAcugGAACGCAUgCGg -3'
miRNA:   3'- -CUGa--CgGGCGUGGUUa--UUUGCGUG-GC- -5'
13322 5' -53.3 NC_003409.1 + 59166 0.68 0.885391
Target:  5'- aGACcagaGCCCGCGCCAaaGUGaaggacauaucGACGC-CCGc -3'
miRNA:   3'- -CUGa---CGGGCGUGGU--UAU-----------UUGCGuGGC- -5'
13322 5' -53.3 NC_003409.1 + 27684 0.68 0.892387
Target:  5'- uGCgGCCUGCGCCGGcgucgcuGugGCGCCu -3'
miRNA:   3'- cUGaCGGGCGUGGUUau-----UugCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 25897 0.68 0.899142
Target:  5'- gGACaGCgCGUACCGAccUAuGCGCGCCc -3'
miRNA:   3'- -CUGaCGgGCGUGGUU--AUuUGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 133300 0.68 0.91191
Target:  5'- aGACUGCCaggGCguuGCCAggaGUGGuggcgaugguGCGCACCGu -3'
miRNA:   3'- -CUGACGGg--CG---UGGU---UAUU----------UGCGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 112585 0.67 0.923109
Target:  5'- aGGCUGCCCuauuaaaGCACCGu--GACgGCGCgGa -3'
miRNA:   3'- -CUGACGGG-------CGUGGUuauUUG-CGUGgC- -5'
13322 5' -53.3 NC_003409.1 + 107649 0.67 0.923674
Target:  5'- cGCUGCCaggGCAucCCAGUcAGCGgGCCGc -3'
miRNA:   3'- cUGACGGg--CGU--GGUUAuUUGCgUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.