miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13322 5' -53.3 NC_003409.1 + 16468 0.67 0.929175
Target:  5'- uGACUgcGCCUGCGCagg-AAACGC-CCGu -3'
miRNA:   3'- -CUGA--CGGGCGUGguuaUUUGCGuGGC- -5'
13322 5' -53.3 NC_003409.1 + 18143 0.67 0.939418
Target:  5'- aACUGgCCagGgGCCAGUGAGCGCcucCCGg -3'
miRNA:   3'- cUGACgGG--CgUGGUUAUUUGCGu--GGC- -5'
13322 5' -53.3 NC_003409.1 + 19137 0.69 0.855079
Target:  5'- --aUGCCCGCcCCAcguGGCGCAUCa -3'
miRNA:   3'- cugACGGGCGuGGUuauUUGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 25897 0.68 0.899142
Target:  5'- gGACaGCgCGUACCGAccUAuGCGCGCCc -3'
miRNA:   3'- -CUGaCGgGCGUGGUU--AUuUGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 26101 0.66 0.948655
Target:  5'- uACUGCCa-UACCGAcGGcCGCGCCGg -3'
miRNA:   3'- cUGACGGgcGUGGUUaUUuGCGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 27684 0.68 0.892387
Target:  5'- uGCgGCCUGCGCCGGcgucgcuGugGCGCCu -3'
miRNA:   3'- cUGaCGGGCGUGGUUau-----UugCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 27833 0.68 0.885391
Target:  5'- cGGCgcaGgCCGCACCGAcugGAACGCAUgCGg -3'
miRNA:   3'- -CUGa--CgGGCGUGGUUa--UUUGCGUG-GC- -5'
13322 5' -53.3 NC_003409.1 + 29203 0.67 0.939418
Target:  5'- cACUGUUCugauaCACCAGUGGGCGCugCu -3'
miRNA:   3'- cUGACGGGc----GUGGUUAUUUGCGugGc -5'
13322 5' -53.3 NC_003409.1 + 38261 0.69 0.854276
Target:  5'- uGCUGgCCaugguccagcuugGCGCCcGUGAugGCGCCGu -3'
miRNA:   3'- cUGACgGG-------------CGUGGuUAUUugCGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 38428 0.66 0.960672
Target:  5'- aGCUGCCCGC-CCAA-AGACu--CCGg -3'
miRNA:   3'- cUGACGGGCGuGGUUaUUUGcguGGC- -5'
13322 5' -53.3 NC_003409.1 + 45659 0.69 0.855079
Target:  5'- aGCgGUCCGcCACCGc-GAACGCACCa -3'
miRNA:   3'- cUGaCGGGC-GUGGUuaUUUGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 45749 0.66 0.944161
Target:  5'- gGGC-GCCauuaGCGCCAugGUGAGCauGCACCa -3'
miRNA:   3'- -CUGaCGGg---CGUGGU--UAUUUG--CGUGGc -5'
13322 5' -53.3 NC_003409.1 + 50846 0.66 0.960672
Target:  5'- -uUUGCCUGUACCAGUGu-CGCcaguGCCu -3'
miRNA:   3'- cuGACGGGCGUGGUUAUuuGCG----UGGc -5'
13322 5' -53.3 NC_003409.1 + 51984 0.66 0.948655
Target:  5'- uGAgUGCCgGguCCGgcGUAGcACGCGCCa -3'
miRNA:   3'- -CUgACGGgCguGGU--UAUU-UGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 54657 0.66 0.960306
Target:  5'- cACUGUCCcaaaacgGCACgGAU-GGCGCACCc -3'
miRNA:   3'- cUGACGGG-------CGUGgUUAuUUGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 59166 0.68 0.885391
Target:  5'- aGACcagaGCCCGCGCCAaaGUGaaggacauaucGACGC-CCGc -3'
miRNA:   3'- -CUGa---CGGGCGUGGU--UAU-----------UUGCGuGGC- -5'
13322 5' -53.3 NC_003409.1 + 73599 0.71 0.765474
Target:  5'- -cCUGCCaCGUACUAAUAAACGC-CgGg -3'
miRNA:   3'- cuGACGG-GCGUGGUUAUUUGCGuGgC- -5'
13322 5' -53.3 NC_003409.1 + 74053 0.67 0.934423
Target:  5'- ---gGCgaGCGCCGGgagGAACGCGCUGg -3'
miRNA:   3'- cugaCGggCGUGGUUa--UUUGCGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 75673 0.67 0.934423
Target:  5'- aGCaGCCagCGuCGCCAAcGGACGCGCCa -3'
miRNA:   3'- cUGaCGG--GC-GUGGUUaUUUGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 80584 1.08 0.005105
Target:  5'- uGACUGCCCGCACCAAUAAACGCACCGc -3'
miRNA:   3'- -CUGACGGGCGUGGUUAUUUGCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.