miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13322 5' -53.3 NC_003409.1 + 118315 0.71 0.765474
Target:  5'- gGGgUGCgCCGCGCCGGguuccugGggUGCGCCGc -3'
miRNA:   3'- -CUgACG-GGCGUGGUUa------UuuGCGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 75673 0.67 0.934423
Target:  5'- aGCaGCCagCGuCGCCAAcGGACGCGCCa -3'
miRNA:   3'- cUGaCGG--GC-GUGGUUaUUUGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 45749 0.66 0.944161
Target:  5'- gGGC-GCCauuaGCGCCAugGUGAGCauGCACCa -3'
miRNA:   3'- -CUGaCGGg---CGUGGU--UAUUUG--CGUGGc -5'
13322 5' -53.3 NC_003409.1 + 87933 0.66 0.960672
Target:  5'- gGGCgGCgCCGUGcCCGGUAGGCcuGCACCa -3'
miRNA:   3'- -CUGaCG-GGCGU-GGUUAUUUG--CGUGGc -5'
13322 5' -53.3 NC_003409.1 + 19137 0.69 0.855079
Target:  5'- --aUGCCCGCcCCAcguGGCGCAUCa -3'
miRNA:   3'- cugACGGGCGuGGUuauUUGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 27684 0.68 0.892387
Target:  5'- uGCgGCCUGCGCCGGcgucgcuGugGCGCCu -3'
miRNA:   3'- cUGaCGGGCGUGGUUau-----UugCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 96096 0.67 0.923674
Target:  5'- uGCUGCCUuaGCCAcuuaaguagGAAUGCACCc -3'
miRNA:   3'- cUGACGGGcgUGGUua-------UUUGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 101826 0.76 0.507515
Target:  5'- --aUGCCCGUAuCCAAaGAACGCGCCc -3'
miRNA:   3'- cugACGGGCGU-GGUUaUUUGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 121361 0.71 0.765474
Target:  5'- uACUGCCCGguucCACCAGgcGGCGUugUGg -3'
miRNA:   3'- cUGACGGGC----GUGGUUauUUGCGugGC- -5'
13322 5' -53.3 NC_003409.1 + 128088 0.67 0.934423
Target:  5'- uGCUGCCCucaccuGCGCCAuc--ACGCcCCGu -3'
miRNA:   3'- cUGACGGG------CGUGGUuauuUGCGuGGC- -5'
13322 5' -53.3 NC_003409.1 + 121790 0.67 0.929175
Target:  5'- ---cGCCCGCAuCCGGccguccUGGGCaGCACCGc -3'
miRNA:   3'- cugaCGGGCGU-GGUU------AUUUG-CGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 111192 0.67 0.929175
Target:  5'- aGCgGgCCGCACCcgucauucgAGUAAugGCGCCc -3'
miRNA:   3'- cUGaCgGGCGUGG---------UUAUUugCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 118361 0.71 0.765474
Target:  5'- gGGgUGCgCCGCGCCGGguuccugGggUGCGCCGc -3'
miRNA:   3'- -CUgACG-GGCGUGGUUa------UuuGCGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 113433 0.67 0.929175
Target:  5'- cGAUcGCCUGCGCCAGcgacGGGCGguCCa -3'
miRNA:   3'- -CUGaCGGGCGUGGUUa---UUUGCguGGc -5'
13322 5' -53.3 NC_003409.1 + 118407 0.71 0.765474
Target:  5'- gGGgUGCgCCGCGCCGGguuccugGggUGCGCCGc -3'
miRNA:   3'- -CUgACG-GGCGUGGUUa------UuuGCGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 16468 0.67 0.929175
Target:  5'- uGACUgcGCCUGCGCagg-AAACGC-CCGu -3'
miRNA:   3'- -CUGA--CGGGCGUGguuaUUUGCGuGGC- -5'
13322 5' -53.3 NC_003409.1 + 99004 0.67 0.934423
Target:  5'- ---aGCCCGCACCAG---GCGC-UCGu -3'
miRNA:   3'- cugaCGGGCGUGGUUauuUGCGuGGC- -5'
13322 5' -53.3 NC_003409.1 + 18143 0.67 0.939418
Target:  5'- aACUGgCCagGgGCCAGUGAGCGCcucCCGg -3'
miRNA:   3'- cUGACgGG--CgUGGUUAUUUGCGu--GGC- -5'
13322 5' -53.3 NC_003409.1 + 38261 0.69 0.854276
Target:  5'- uGCUGgCCaugguccagcuugGCGCCcGUGAugGCGCCGu -3'
miRNA:   3'- cUGACgGG-------------CGUGGuUAUUugCGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 133300 0.68 0.91191
Target:  5'- aGACUGCCaggGCguuGCCAggaGUGGuggcgaugguGCGCACCGu -3'
miRNA:   3'- -CUGACGGg--CG---UGGU---UAUU----------UGCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.