miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13324 3' -53.8 NC_003409.1 + 52036 0.66 0.939778
Target:  5'- gUCAAUGCCGauguaccCGcUACCUGGCGAg -3'
miRNA:   3'- aAGUUGUGGCgc-----GCuAUGGACCGUUg -5'
13324 3' -53.8 NC_003409.1 + 4318 0.66 0.939778
Target:  5'- -aCAGCAUgGCcuGgGAUACCUcucagaGGCAACa -3'
miRNA:   3'- aaGUUGUGgCG--CgCUAUGGA------CCGUUG- -5'
13324 3' -53.8 NC_003409.1 + 66781 0.66 0.939778
Target:  5'- -aCAGCGCCucaGCGAggACCUGcGCAGa -3'
miRNA:   3'- aaGUUGUGGcg-CGCUa-UGGAC-CGUUg -5'
13324 3' -53.8 NC_003409.1 + 12085 0.66 0.934757
Target:  5'- cUCGACAuUCGgGUGGUACgaGuGCAGCa -3'
miRNA:   3'- aAGUUGU-GGCgCGCUAUGgaC-CGUUG- -5'
13324 3' -53.8 NC_003409.1 + 88850 0.66 0.934757
Target:  5'- -gCAGCccCCGCGCcccUGCCUgccGGCAGCg -3'
miRNA:   3'- aaGUUGu-GGCGCGcu-AUGGA---CCGUUG- -5'
13324 3' -53.8 NC_003409.1 + 71878 0.66 0.929479
Target:  5'- --aAGCACCGCcCGAUccuuuuuuGCCUGGUAc- -3'
miRNA:   3'- aagUUGUGGCGcGCUA--------UGGACCGUug -5'
13324 3' -53.8 NC_003409.1 + 119968 0.66 0.915757
Target:  5'- --gAGCACgCGCGCGGcgcccacgccggcGCCUGGCAcGCg -3'
miRNA:   3'- aagUUGUG-GCGCGCUa------------UGGACCGU-UG- -5'
13324 3' -53.8 NC_003409.1 + 14973 0.67 0.912095
Target:  5'- --aGGCACCccuaccgucGCGCGAgACgCUGGUAACu -3'
miRNA:   3'- aagUUGUGG---------CGCGCUaUG-GACCGUUG- -5'
13324 3' -53.8 NC_003409.1 + 121526 0.67 0.912095
Target:  5'- -aCAACGCCGCcugGUGGaACCgGGCAGu -3'
miRNA:   3'- aaGUUGUGGCG---CGCUaUGGaCCGUUg -5'
13324 3' -53.8 NC_003409.1 + 108535 0.67 0.905787
Target:  5'- --gAAgGCCGCgGUGGaauCCUGGCGGCa -3'
miRNA:   3'- aagUUgUGGCG-CGCUau-GGACCGUUG- -5'
13324 3' -53.8 NC_003409.1 + 28839 0.67 0.899226
Target:  5'- --aAACACCGCGCGG--UCUGG-AGCu -3'
miRNA:   3'- aagUUGUGGCGCGCUauGGACCgUUG- -5'
13324 3' -53.8 NC_003409.1 + 77438 0.67 0.899226
Target:  5'- --uGGgACCGgGCGAagGCCUGGCGc- -3'
miRNA:   3'- aagUUgUGGCgCGCUa-UGGACCGUug -5'
13324 3' -53.8 NC_003409.1 + 18396 0.67 0.892414
Target:  5'- cUCGAUGCCGCGCuugGgUUGGCGAg -3'
miRNA:   3'- aAGUUGUGGCGCGcuaUgGACCGUUg -5'
13324 3' -53.8 NC_003409.1 + 95271 0.67 0.892414
Target:  5'- aUCAGgGCCaaGUGCGuga-CUGGCAGCg -3'
miRNA:   3'- aAGUUgUGG--CGCGCuaugGACCGUUG- -5'
13324 3' -53.8 NC_003409.1 + 33488 0.67 0.891022
Target:  5'- --uGGCGCUGCuccagGCGAgaacagcccuccGCCUGGCAACa -3'
miRNA:   3'- aagUUGUGGCG-----CGCUa-----------UGGACCGUUG- -5'
13324 3' -53.8 NC_003409.1 + 110094 0.67 0.885356
Target:  5'- -cCAGCGCCGCcagaGCGuuccugcGCCUGGcCGACc -3'
miRNA:   3'- aaGUUGUGGCG----CGCua-----UGGACC-GUUG- -5'
13324 3' -53.8 NC_003409.1 + 120299 0.68 0.878055
Target:  5'- cUCAACGCCaauauGCGCGGcUGCgUGGUAu- -3'
miRNA:   3'- aAGUUGUGG-----CGCGCU-AUGgACCGUug -5'
13324 3' -53.8 NC_003409.1 + 128261 0.68 0.870518
Target:  5'- gUCAGCACgggGCGUGAUGgCgcaggugagGGCAGCa -3'
miRNA:   3'- aAGUUGUGg--CGCGCUAUgGa--------CCGUUG- -5'
13324 3' -53.8 NC_003409.1 + 107483 0.68 0.870518
Target:  5'- -gCGGC-CCGCugacuGgGAUGcCCUGGCAGCg -3'
miRNA:   3'- aaGUUGuGGCG-----CgCUAU-GGACCGUUG- -5'
13324 3' -53.8 NC_003409.1 + 131401 0.68 0.86275
Target:  5'- ---cGCGCCGUGUGGccgcguuggugcUGCCUGGgAGCa -3'
miRNA:   3'- aaguUGUGGCGCGCU------------AUGGACCgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.