miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13327 5' -64 NC_003409.1 + 88099 1.07 0.000697
Target:  5'- gGUGCAGGCCUACCGGGCACGGCGCCGc -3'
miRNA:   3'- -CACGUCCGGAUGGCCCGUGCCGCGGC- -5'
13327 5' -64 NC_003409.1 + 133027 0.75 0.132075
Target:  5'- gGUGguGGCagagUCGGGCGCGGUGCCu -3'
miRNA:   3'- -CACguCCGgau-GGCCCGUGCCGCGGc -5'
13327 5' -64 NC_003409.1 + 5208 0.75 0.149461
Target:  5'- -aGUaaaGGGUCagaaaaACCGGGCACGGCGCCu -3'
miRNA:   3'- caCG---UCCGGa-----UGGCCCGUGCCGCGGc -5'
13327 5' -64 NC_003409.1 + 102714 0.73 0.204735
Target:  5'- -cGcCAGGUUUGCC-GGUACGGCGCCu -3'
miRNA:   3'- caC-GUCCGGAUGGcCCGUGCCGCGGc -5'
13327 5' -64 NC_003409.1 + 100425 0.71 0.264573
Target:  5'- cGUuUAGGCCUGCCGGuuccCGGCGCUGg -3'
miRNA:   3'- -CAcGUCCGGAUGGCCcgu-GCCGCGGC- -5'
13327 5' -64 NC_003409.1 + 45734 0.7 0.283185
Target:  5'- uUGuCAGGCCaccCCGGGCGCcauuaGCGCCa -3'
miRNA:   3'- cAC-GUCCGGau-GGCCCGUGc----CGCGGc -5'
13327 5' -64 NC_003409.1 + 111973 0.7 0.283185
Target:  5'- aGUGaguccuGGCCc-CCGGGCGUGGUGCCGg -3'
miRNA:   3'- -CACgu----CCGGauGGCCCGUGCCGCGGC- -5'
13327 5' -64 NC_003409.1 + 45915 0.7 0.29616
Target:  5'- uUGUGGGCUUGCCuucgguGGUACGGCGCg- -3'
miRNA:   3'- cACGUCCGGAUGGc-----CCGUGCCGCGgc -5'
13327 5' -64 NC_003409.1 + 101065 0.7 0.302819
Target:  5'- cUGCaugAGGCCUugC-GGCA-GGCGCCGu -3'
miRNA:   3'- cACG---UCCGGAugGcCCGUgCCGCGGC- -5'
13327 5' -64 NC_003409.1 + 100085 0.7 0.316481
Target:  5'- cGUGCGGGCCaaUGCCauGGCGgGGCgGCUGu -3'
miRNA:   3'- -CACGUCCGG--AUGGc-CCGUgCCG-CGGC- -5'
13327 5' -64 NC_003409.1 + 111137 0.69 0.360218
Target:  5'- -cGCcGGCCUucGCCcucaguccggggGGGCugGaGCGCCGu -3'
miRNA:   3'- caCGuCCGGA--UGG------------CCCGugC-CGCGGC- -5'
13327 5' -64 NC_003409.1 + 27682 0.69 0.367905
Target:  5'- gGUGC-GGCCUgcGCCGGcGuCGCuguGGCGCCu -3'
miRNA:   3'- -CACGuCCGGA--UGGCC-C-GUG---CCGCGGc -5'
13327 5' -64 NC_003409.1 + 111499 0.68 0.378855
Target:  5'- -cGCGGGCUacggUGCgccuugggguaacggCGGGCACGGCGUg- -3'
miRNA:   3'- caCGUCCGG----AUG---------------GCCCGUGCCGCGgc -5'
13327 5' -64 NC_003409.1 + 87659 0.68 0.383615
Target:  5'- -cGCGuGGCUUccccGCCGGGaaacCGGUGCCGa -3'
miRNA:   3'- caCGU-CCGGA----UGGCCCgu--GCCGCGGC- -5'
13327 5' -64 NC_003409.1 + 57734 0.68 0.407999
Target:  5'- -cGCGGGCCcgcuUGCCuuuGGGCuGCGGUGCg- -3'
miRNA:   3'- caCGUCCGG----AUGG---CCCG-UGCCGCGgc -5'
13327 5' -64 NC_003409.1 + 54404 0.67 0.441974
Target:  5'- -cGUGGGCgUGgCGGG-AUGGUGCCGu -3'
miRNA:   3'- caCGUCCGgAUgGCCCgUGCCGCGGC- -5'
13327 5' -64 NC_003409.1 + 114649 0.67 0.467581
Target:  5'- -gGCAGGuCCUGCgcaagauCGuGaGCACGGaCGCCGu -3'
miRNA:   3'- caCGUCC-GGAUG-------GC-C-CGUGCC-GCGGC- -5'
13327 5' -64 NC_003409.1 + 119785 0.67 0.476587
Target:  5'- aUGUuGGCCgcgUGCCaGGCGCcggcgugGGCGCCGc -3'
miRNA:   3'- cACGuCCGG---AUGGcCCGUG-------CCGCGGC- -5'
13327 5' -64 NC_003409.1 + 67334 0.67 0.477492
Target:  5'- cGUGgAGGCCaggAUgCGGGUugGGuCGCUGc -3'
miRNA:   3'- -CACgUCCGGa--UG-GCCCGugCC-GCGGC- -5'
13327 5' -64 NC_003409.1 + 51113 0.67 0.477492
Target:  5'- cGUGCAGGaaauaGCCcugGGGgACGGCGUCa -3'
miRNA:   3'- -CACGUCCgga--UGG---CCCgUGCCGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.