Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13327 | 5' | -64 | NC_003409.1 | + | 5208 | 0.75 | 0.149461 |
Target: 5'- -aGUaaaGGGUCagaaaaACCGGGCACGGCGCCu -3' miRNA: 3'- caCG---UCCGGa-----UGGCCCGUGCCGCGGc -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 20808 | 0.66 | 0.533233 |
Target: 5'- --cCAGGgaguuCCUgGCCGGGCGCGGC-CUGg -3' miRNA: 3'- cacGUCC-----GGA-UGGCCCGUGCCGcGGC- -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 25931 | 0.66 | 0.486592 |
Target: 5'- -cGC-GGUUgGCC-GGCGCGGCGUCGg -3' miRNA: 3'- caCGuCCGGaUGGcCCGUGCCGCGGC- -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 27682 | 0.69 | 0.367905 |
Target: 5'- gGUGC-GGCCUgcGCCGGcGuCGCuguGGCGCCu -3' miRNA: 3'- -CACGuCCGGA--UGGCC-C-GUG---CCGCGGc -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 31236 | 0.66 | 0.533233 |
Target: 5'- cGUGCAGGCgCcACaCGGucaguuccaGCaaGCGGCGCCc -3' miRNA: 3'- -CACGUCCG-GaUG-GCC---------CG--UGCCGCGGc -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 40794 | 0.66 | 0.505032 |
Target: 5'- --aCAGGCC--CCGGGCGgCGGCucGCCu -3' miRNA: 3'- cacGUCCGGauGGCCCGU-GCCG--CGGc -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 41724 | 0.66 | 0.533233 |
Target: 5'- uUGCAGGCgUgcuuccaacgauACCGGcCACGGaCGCgCGg -3' miRNA: 3'- cACGUCCGgA------------UGGCCcGUGCC-GCG-GC- -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 45734 | 0.7 | 0.283185 |
Target: 5'- uUGuCAGGCCaccCCGGGCGCcauuaGCGCCa -3' miRNA: 3'- cAC-GUCCGGau-GGCCCGUGc----CGCGGc -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 45915 | 0.7 | 0.29616 |
Target: 5'- uUGUGGGCUUGCCuucgguGGUACGGCGCg- -3' miRNA: 3'- cACGUCCGGAUGGc-----CCGUGCCGCGgc -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 51113 | 0.67 | 0.477492 |
Target: 5'- cGUGCAGGaaauaGCCcugGGGgACGGCGUCa -3' miRNA: 3'- -CACGUCCgga--UGG---CCCgUGCCGCGGc -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 54404 | 0.67 | 0.441974 |
Target: 5'- -cGUGGGCgUGgCGGG-AUGGUGCCGu -3' miRNA: 3'- caCGUCCGgAUgGCCCgUGCCGCGGC- -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 57734 | 0.68 | 0.407999 |
Target: 5'- -cGCGGGCCcgcuUGCCuuuGGGCuGCGGUGCg- -3' miRNA: 3'- caCGUCCGG----AUGG---CCCG-UGCCGCGgc -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 67334 | 0.67 | 0.477492 |
Target: 5'- cGUGgAGGCCaggAUgCGGGUugGGuCGCUGc -3' miRNA: 3'- -CACgUCCGGa--UG-GCCCGugCC-GCGGC- -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 87659 | 0.68 | 0.383615 |
Target: 5'- -cGCGuGGCUUccccGCCGGGaaacCGGUGCCGa -3' miRNA: 3'- caCGU-CCGGA----UGGCCCgu--GCCGCGGC- -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 88099 | 1.07 | 0.000697 |
Target: 5'- gGUGCAGGCCUACCGGGCACGGCGCCGc -3' miRNA: 3'- -CACGUCCGGAUGGCCCGUGCCGCGGC- -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 100085 | 0.7 | 0.316481 |
Target: 5'- cGUGCGGGCCaaUGCCauGGCGgGGCgGCUGu -3' miRNA: 3'- -CACGUCCGG--AUGGc-CCGUgCCG-CGGC- -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 100425 | 0.71 | 0.264573 |
Target: 5'- cGUuUAGGCCUGCCGGuuccCGGCGCUGg -3' miRNA: 3'- -CAcGUCCGGAUGGCCcgu-GCCGCGGC- -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 101065 | 0.7 | 0.302819 |
Target: 5'- cUGCaugAGGCCUugC-GGCA-GGCGCCGu -3' miRNA: 3'- cACG---UCCGGAugGcCCGUgCCGCGGC- -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 102714 | 0.73 | 0.204735 |
Target: 5'- -cGcCAGGUUUGCC-GGUACGGCGCCu -3' miRNA: 3'- caC-GUCCGGAUGGcCCGUGCCGCGGc -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 104854 | 0.66 | 0.514364 |
Target: 5'- -cGCgAGGUCUGCgCGGGCGCGuuuCGUCu -3' miRNA: 3'- caCG-UCCGGAUG-GCCCGUGCc--GCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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