Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13327 | 5' | -64 | NC_003409.1 | + | 111137 | 0.69 | 0.360218 |
Target: 5'- -cGCcGGCCUucGCCcucaguccggggGGGCugGaGCGCCGu -3' miRNA: 3'- caCGuCCGGA--UGG------------CCCGugC-CGCGGC- -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 111499 | 0.68 | 0.378855 |
Target: 5'- -cGCGGGCUacggUGCgccuugggguaacggCGGGCACGGCGUg- -3' miRNA: 3'- caCGUCCGG----AUG---------------GCCCGUGCCGCGgc -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 111973 | 0.7 | 0.283185 |
Target: 5'- aGUGaguccuGGCCc-CCGGGCGUGGUGCCGg -3' miRNA: 3'- -CACgu----CCGGauGGCCCGUGCCGCGGC- -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 114649 | 0.67 | 0.467581 |
Target: 5'- -gGCAGGuCCUGCgcaagauCGuGaGCACGGaCGCCGu -3' miRNA: 3'- caCGUCC-GGAUG-------GC-C-CGUGCC-GCGGC- -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 119785 | 0.67 | 0.476587 |
Target: 5'- aUGUuGGCCgcgUGCCaGGCGCcggcgugGGCGCCGc -3' miRNA: 3'- cACGuCCGG---AUGGcCCGUG-------CCGCGGC- -5' |
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13327 | 5' | -64 | NC_003409.1 | + | 133027 | 0.75 | 0.132075 |
Target: 5'- gGUGguGGCagagUCGGGCGCGGUGCCu -3' miRNA: 3'- -CACguCCGgau-GGCCCGUGCCGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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