miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13338 5' -61.1 NC_003409.1 + 61045 0.66 0.681778
Target:  5'- uGG-GGCACCagCAGagaaaGGACCCGcCCUGc -3'
miRNA:   3'- gCCaCCGUGGg-GUC-----CUUGGGCaGGAC- -5'
13338 5' -61.1 NC_003409.1 + 34560 0.66 0.671929
Target:  5'- -cGUGGCGaucguCCCCGGGGACCCucacuucUCCg- -3'
miRNA:   3'- gcCACCGU-----GGGGUCCUUGGGc------AGGac -5'
13338 5' -61.1 NC_003409.1 + 49151 0.66 0.671929
Target:  5'- uGGUGGCcauucGCaCCAGGAcggAgCCGUCCa- -3'
miRNA:   3'- gCCACCG-----UGgGGUCCU---UgGGCAGGac -5'
13338 5' -61.1 NC_003409.1 + 23922 0.66 0.652149
Target:  5'- uCGGUGGauggguGCCaggauuaUAGGGGCCUGUCCa- -3'
miRNA:   3'- -GCCACCg-----UGGg------GUCCUUGGGCAGGac -5'
13338 5' -61.1 NC_003409.1 + 33988 0.66 0.652149
Target:  5'- aGGguacgGGCGCgCCAGGGacagcGCCCG-CCa- -3'
miRNA:   3'- gCCa----CCGUGgGGUCCU-----UGGGCaGGac -5'
13338 5' -61.1 NC_003409.1 + 84044 0.66 0.6462
Target:  5'- cCGGUGGCgguuggcaaguuagaGCCCCAcgc-CCCGUCCc- -3'
miRNA:   3'- -GCCACCG---------------UGGGGUccuuGGGCAGGac -5'
13338 5' -61.1 NC_003409.1 + 97995 0.66 0.642232
Target:  5'- uGGUcuacaaacGGCGCCCUGGcacGAGCCCuGUCCa- -3'
miRNA:   3'- gCCA--------CCGUGGGGUC---CUUGGG-CAGGac -5'
13338 5' -61.1 NC_003409.1 + 108762 0.66 0.642232
Target:  5'- uGGUGGC-CaaCAGGAGgCCGgCCUGc -3'
miRNA:   3'- gCCACCGuGggGUCCUUgGGCaGGAC- -5'
13338 5' -61.1 NC_003409.1 + 80278 0.67 0.622384
Target:  5'- uGuGUGGCGCCCUacacgGGGAguuucgugACCaCGUCCa- -3'
miRNA:   3'- gC-CACCGUGGGG-----UCCU--------UGG-GCAGGac -5'
13338 5' -61.1 NC_003409.1 + 106787 0.67 0.602564
Target:  5'- uGGUgaGGCGuucaCCGGGGGCCCGcaccUCCUGa -3'
miRNA:   3'- gCCA--CCGUgg--GGUCCUUGGGC----AGGAC- -5'
13338 5' -61.1 NC_003409.1 + 113614 0.68 0.56322
Target:  5'- uGGgccaGGCACCUguuGGAccGCCCGUCgCUGg -3'
miRNA:   3'- gCCa---CCGUGGGgu-CCU--UGGGCAG-GAC- -5'
13338 5' -61.1 NC_003409.1 + 103424 0.69 0.515091
Target:  5'- aCGGUGGCcUCCCuGGuGGCCUGUUCg- -3'
miRNA:   3'- -GCCACCGuGGGGuCC-UUGGGCAGGac -5'
13338 5' -61.1 NC_003409.1 + 107810 0.69 0.515091
Target:  5'- aCGGUGGgcaCGCCCCuGGAGCUC--CCUGc -3'
miRNA:   3'- -GCCACC---GUGGGGuCCUUGGGcaGGAC- -5'
13338 5' -61.1 NC_003409.1 + 16464 0.69 0.505658
Target:  5'- uCGGUGacuGCGCCUgcgCAGGAaacGCCCGUCUg- -3'
miRNA:   3'- -GCCAC---CGUGGG---GUCCU---UGGGCAGGac -5'
13338 5' -61.1 NC_003409.1 + 49197 0.69 0.505658
Target:  5'- aCGGUgGGCAUagcuaCCCAGGAGCCCuaCCg- -3'
miRNA:   3'- -GCCA-CCGUG-----GGGUCCUUGGGcaGGac -5'
13338 5' -61.1 NC_003409.1 + 24328 0.69 0.48702
Target:  5'- cCGGcaGCACCCCAGGAGCCCc----- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUUGGGcaggac -5'
13338 5' -61.1 NC_003409.1 + 24428 0.69 0.48702
Target:  5'- cCGGcaGCACCCCAGGAGCCCc----- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUUGGGcaggac -5'
13338 5' -61.1 NC_003409.1 + 24408 0.69 0.48702
Target:  5'- cCGGcaGCACCCCAGGAGCCCc----- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUUGGGcaggac -5'
13338 5' -61.1 NC_003409.1 + 24388 0.69 0.48702
Target:  5'- cCGGcaGCACCCCAGGAGCCCc----- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUUGGGcaggac -5'
13338 5' -61.1 NC_003409.1 + 24368 0.69 0.48702
Target:  5'- cCGGcaGCACCCCAGGAGCCCc----- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUUGGGcaggac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.