miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13338 5' -61.1 NC_003409.1 + 118605 0.74 0.269192
Target:  5'- cCGGcgcgGcGCACCCCAGGAACCCGg---- -3'
miRNA:   3'- -GCCa---C-CGUGGGGUCCUUGGGCaggac -5'
13338 5' -61.1 NC_003409.1 + 24887 0.73 0.301552
Target:  5'- gGGUGGCGCgCCGGGAucCCCcUCCg- -3'
miRNA:   3'- gCCACCGUGgGGUCCUu-GGGcAGGac -5'
13338 5' -61.1 NC_003409.1 + 24917 0.73 0.301552
Target:  5'- gGGUGGCGCgCCGGGAucCCCcUCCg- -3'
miRNA:   3'- gCCACCGUGgGGUCCUu-GGGcAGGac -5'
13338 5' -61.1 NC_003409.1 + 24947 0.73 0.301552
Target:  5'- gGGUGGCGCgCCGGGAucCCCcUCCg- -3'
miRNA:   3'- gCCACCGUGgGGUCCUu-GGGcAGGac -5'
13338 5' -61.1 NC_003409.1 + 25007 0.73 0.301552
Target:  5'- gGGUGGCGCgCCGGGAucCCCcUCCg- -3'
miRNA:   3'- gCCACCGUGgGGUCCUu-GGGcAGGac -5'
13338 5' -61.1 NC_003409.1 + 24977 0.73 0.301552
Target:  5'- gGGUGGCGCgCCGGGAucCCCcUCCg- -3'
miRNA:   3'- gCCACCGUGgGGUCCUu-GGGcAGGac -5'
13338 5' -61.1 NC_003409.1 + 118577 0.73 0.281788
Target:  5'- gCGGc-GCACCCCAGGAACCCGg---- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUUGGGCaggac -5'
13338 5' -61.1 NC_003409.1 + 118491 0.74 0.269192
Target:  5'- cCGGcgcgGcGCACCCCAGGAACCCGg---- -3'
miRNA:   3'- -GCCa---C-CGUGGGGUCCUUGGGCaggac -5'
13338 5' -61.1 NC_003409.1 + 118537 0.74 0.269192
Target:  5'- cCGGcgcgGcGCACCCCAGGAACCCGg---- -3'
miRNA:   3'- -GCCa---C-CGUGGGGUCCUUGGGCaggac -5'
13338 5' -61.1 NC_003409.1 + 24857 0.73 0.301552
Target:  5'- gGGUGGCGCgCCGGGAucCCCcUCCg- -3'
miRNA:   3'- gCCACCGUGgGGUCCUu-GGGcAGGac -5'
13338 5' -61.1 NC_003409.1 + 24827 0.73 0.301552
Target:  5'- gGGUGGCGCgCCGGGAucCCCcUCCg- -3'
miRNA:   3'- gCCACCGUGgGGUCCUu-GGGcAGGac -5'
13338 5' -61.1 NC_003409.1 + 24797 0.73 0.301552
Target:  5'- gGGUGGCGCgCCGGGAucCCCcUCCg- -3'
miRNA:   3'- gCCACCGUGgGGUCCUu-GGGcAGGac -5'
13338 5' -61.1 NC_003409.1 + 34560 0.66 0.671929
Target:  5'- -cGUGGCGaucguCCCCGGGGACCCucacuucUCCg- -3'
miRNA:   3'- gcCACCGU-----GGGGUCCUUGGGc------AGGac -5'
13338 5' -61.1 NC_003409.1 + 49151 0.66 0.671929
Target:  5'- uGGUGGCcauucGCaCCAGGAcggAgCCGUCCa- -3'
miRNA:   3'- gCCACCG-----UGgGGUCCU---UgGGCAGGac -5'
13338 5' -61.1 NC_003409.1 + 33988 0.66 0.652149
Target:  5'- aGGguacgGGCGCgCCAGGGacagcGCCCG-CCa- -3'
miRNA:   3'- gCCa----CCGUGgGGUCCU-----UGGGCaGGac -5'
13338 5' -61.1 NC_003409.1 + 84044 0.66 0.6462
Target:  5'- cCGGUGGCgguuggcaaguuagaGCCCCAcgc-CCCGUCCc- -3'
miRNA:   3'- -GCCACCG---------------UGGGGUccuuGGGCAGGac -5'
13338 5' -61.1 NC_003409.1 + 108762 0.66 0.642232
Target:  5'- uGGUGGC-CaaCAGGAGgCCGgCCUGc -3'
miRNA:   3'- gCCACCGuGggGUCCUUgGGCaGGAC- -5'
13338 5' -61.1 NC_003409.1 + 113614 0.68 0.56322
Target:  5'- uGGgccaGGCACCUguuGGAccGCCCGUCgCUGg -3'
miRNA:   3'- gCCa---CCGUGGGgu-CCU--UGGGCAG-GAC- -5'
13338 5' -61.1 NC_003409.1 + 103424 0.69 0.515091
Target:  5'- aCGGUGGCcUCCCuGGuGGCCUGUUCg- -3'
miRNA:   3'- -GCCACCGuGGGGuCC-UUGGGCAGGac -5'
13338 5' -61.1 NC_003409.1 + 24767 0.73 0.301552
Target:  5'- gGGUGGCGCgCCGGGAucCCCcUCCg- -3'
miRNA:   3'- gCCACCGUGgGGUCCUu-GGGcAGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.