miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13340 5' -55.8 NC_003409.1 + 88791 0.66 0.910383
Target:  5'- --gUGGCCCAUucugagccaCCGGCUuuaGGCauGUCCg -3'
miRNA:   3'- guaACCGGGUA---------GGCCGG---CUGguUAGG- -5'
13340 5' -55.8 NC_003409.1 + 108760 0.66 0.904221
Target:  5'- --gUGGCCaacaggaGGCCGGCCugcUCCg -3'
miRNA:   3'- guaACCGGguagg--CCGGCUGGuu-AGG- -5'
13340 5' -55.8 NC_003409.1 + 82437 0.66 0.89717
Target:  5'- ---cGGCCCAgggggggugggauUCCcugGGCCGACUGGguaCCa -3'
miRNA:   3'- guaaCCGGGU-------------AGG---CCGGCUGGUUa--GG- -5'
13340 5' -55.8 NC_003409.1 + 35410 0.66 0.891192
Target:  5'- ---gGGCCCAcCUGGCC-ACCuaccgCCg -3'
miRNA:   3'- guaaCCGGGUaGGCCGGcUGGuua--GG- -5'
13340 5' -55.8 NC_003409.1 + 39963 0.66 0.889157
Target:  5'- gAUUGGaCUCAggCGGCCGAgacucggagaaagcCCGGUCUg -3'
miRNA:   3'- gUAACC-GGGUagGCCGGCU--------------GGUUAGG- -5'
13340 5' -55.8 NC_003409.1 + 132946 0.66 0.884331
Target:  5'- ---cGGC--AUCCGGaCCGGCCGcgggAUCCg -3'
miRNA:   3'- guaaCCGggUAGGCC-GGCUGGU----UAGG- -5'
13340 5' -55.8 NC_003409.1 + 11860 0.66 0.884331
Target:  5'- ---aGGCCC-UCCaGGCUGGCUucGGUCg -3'
miRNA:   3'- guaaCCGGGuAGG-CCGGCUGG--UUAGg -5'
13340 5' -55.8 NC_003409.1 + 107529 0.67 0.869937
Target:  5'- gGUUcGCCCcuUCCGG-CGGCCGuggGUCCa -3'
miRNA:   3'- gUAAcCGGGu-AGGCCgGCUGGU---UAGG- -5'
13340 5' -55.8 NC_003409.1 + 90148 0.67 0.869937
Target:  5'- --cUGGCCggCGUCUGgacGCCGGCggCAGUCCa -3'
miRNA:   3'- guaACCGG--GUAGGC---CGGCUG--GUUAGG- -5'
13340 5' -55.8 NC_003409.1 + 112151 0.67 0.854681
Target:  5'- ---aGGCCCugcAUCCGGC--ACCAcgCCc -3'
miRNA:   3'- guaaCCGGG---UAGGCCGgcUGGUuaGG- -5'
13340 5' -55.8 NC_003409.1 + 95939 0.67 0.838613
Target:  5'- --gUGuGCCCA-CUGGCUG-CCAAUCa -3'
miRNA:   3'- guaAC-CGGGUaGGCCGGCuGGUUAGg -5'
13340 5' -55.8 NC_003409.1 + 108786 0.67 0.838613
Target:  5'- ---gGGCCUggCCGGCC-ACCGuGUCUa -3'
miRNA:   3'- guaaCCGGGuaGGCCGGcUGGU-UAGG- -5'
13340 5' -55.8 NC_003409.1 + 72145 0.68 0.830291
Target:  5'- ---gGGagCGUCCGGCCGucuCCGcUCCg -3'
miRNA:   3'- guaaCCggGUAGGCCGGCu--GGUuAGG- -5'
13340 5' -55.8 NC_003409.1 + 97687 0.68 0.821787
Target:  5'- cCAUUGGCCuCAcCCGGCUugcagaGACCua-CCu -3'
miRNA:   3'- -GUAACCGG-GUaGGCCGG------CUGGuuaGG- -5'
13340 5' -55.8 NC_003409.1 + 79609 0.68 0.795264
Target:  5'- --gUGGCCUcgggguUCCuuggcGGCCGGCCAcuggaggcGUCCg -3'
miRNA:   3'- guaACCGGGu-----AGG-----CCGGCUGGU--------UAGG- -5'
13340 5' -55.8 NC_003409.1 + 108615 0.68 0.795264
Target:  5'- uGUUGGCCa--CCauagacacgguGGCCGGCCAggCCc -3'
miRNA:   3'- gUAACCGGguaGG-----------CCGGCUGGUuaGG- -5'
13340 5' -55.8 NC_003409.1 + 54787 0.69 0.739431
Target:  5'- ---aGGUCCAgccaaucugcaguggCCGGCCGGCCuugcggCCa -3'
miRNA:   3'- guaaCCGGGUa--------------GGCCGGCUGGuua---GG- -5'
13340 5' -55.8 NC_003409.1 + 68097 0.7 0.7286
Target:  5'- ---gGGCCCGUCUGGCCagaGGCC--UCg -3'
miRNA:   3'- guaaCCGGGUAGGCCGG---CUGGuuAGg -5'
13340 5' -55.8 NC_003409.1 + 16635 0.71 0.626979
Target:  5'- --cUGGCCCcgCgCGGCCG-CCAgguaGUCUg -3'
miRNA:   3'- guaACCGGGuaG-GCCGGCuGGU----UAGG- -5'
13340 5' -55.8 NC_003409.1 + 23330 0.72 0.575775
Target:  5'- cCAUUGGUCCG-CCGGCCcgUCAAUCa -3'
miRNA:   3'- -GUAACCGGGUaGGCCGGcuGGUUAGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.