miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13344 3' -52.3 NC_003409.1 + 73581 0.66 0.978043
Target:  5'- aCGCCGGGU-CuguACCC-GAUGGGUUa -3'
miRNA:   3'- cGCGGUUCAcGuu-UGGGaUUACCCGG- -5'
13344 3' -52.3 NC_003409.1 + 119790 0.66 0.978043
Target:  5'- -gGCCGcGUGcCAGGCgCCggcGUGGGCg -3'
miRNA:   3'- cgCGGUuCAC-GUUUG-GGau-UACCCGg -5'
13344 3' -52.3 NC_003409.1 + 133016 0.66 0.978043
Target:  5'- -aGUCGGGcGCGGugCCUGGggaucUGGGCg -3'
miRNA:   3'- cgCGGUUCaCGUUugGGAUU-----ACCCGg -5'
13344 3' -52.3 NC_003409.1 + 133533 0.66 0.977309
Target:  5'- -gGCCGAGaugcUGCAGgagcgggaguccccACCCUGggGGGUUu -3'
miRNA:   3'- cgCGGUUC----ACGUU--------------UGGGAUuaCCCGG- -5'
13344 3' -52.3 NC_003409.1 + 108092 0.66 0.975526
Target:  5'- gGCGUgu-GUGCGucGGCUCgu-UGGGCCu -3'
miRNA:   3'- -CGCGguuCACGU--UUGGGauuACCCGG- -5'
13344 3' -52.3 NC_003409.1 + 24070 0.66 0.975526
Target:  5'- cGCGCCccagaacauGGGUgGCuAACgCCUAcAUGGGCa -3'
miRNA:   3'- -CGCGG---------UUCA-CGuUUG-GGAU-UACCCGg -5'
13344 3' -52.3 NC_003409.1 + 46150 0.66 0.975264
Target:  5'- -aGCCAAGUGCGGugUgcagggaagcgauCUcGUGGGUa -3'
miRNA:   3'- cgCGGUUCACGUUugG-------------GAuUACCCGg -5'
13344 3' -52.3 NC_003409.1 + 38324 0.66 0.973919
Target:  5'- aGCGCCAaggguGGUGUGGuuauACCCgacaguggugaacGUGGGCa -3'
miRNA:   3'- -CGCGGU-----UCACGUU----UGGGau-----------UACCCGg -5'
13344 3' -52.3 NC_003409.1 + 73034 0.66 0.972805
Target:  5'- cCGCCGGGcUGCu--CUCUGAgcaguccaGGGCCc -3'
miRNA:   3'- cGCGGUUC-ACGuuuGGGAUUa-------CCCGG- -5'
13344 3' -52.3 NC_003409.1 + 77252 0.66 0.972805
Target:  5'- cGCGcCCAGGgGCAGACCCaAAaaGGaCCu -3'
miRNA:   3'- -CGC-GGUUCaCGUUUGGGaUUacCC-GG- -5'
13344 3' -52.3 NC_003409.1 + 111362 0.66 0.971947
Target:  5'- gGCGCCAuuacucgaaugacgGGUGCG-GCCCgcuuuucugcgGggGGGCUu -3'
miRNA:   3'- -CGCGGU--------------UCACGUuUGGGa----------UuaCCCGG- -5'
13344 3' -52.3 NC_003409.1 + 128186 0.66 0.969871
Target:  5'- cGCGCCAAGgaggGCuAGCCa-GAUGaacGCCa -3'
miRNA:   3'- -CGCGGUUCa---CGuUUGGgaUUACc--CGG- -5'
13344 3' -52.3 NC_003409.1 + 133952 0.66 0.969871
Target:  5'- uGCaGCagaacUGCAAGCUCUGuugacaauguuGUGGGCCg -3'
miRNA:   3'- -CG-CGguuc-ACGUUUGGGAU-----------UACCCGG- -5'
13344 3' -52.3 NC_003409.1 + 87199 0.66 0.969871
Target:  5'- cGCGCCAcccugcGUGUgggaaAGACCCUGGuuUGGagcGCCu -3'
miRNA:   3'- -CGCGGUu-----CACG-----UUUGGGAUU--ACC---CGG- -5'
13344 3' -52.3 NC_003409.1 + 121167 0.66 0.969871
Target:  5'- aGUGCUugaUGUAGACCCUua-GGGCa -3'
miRNA:   3'- -CGCGGuucACGUUUGGGAuuaCCCGg -5'
13344 3' -52.3 NC_003409.1 + 112155 0.66 0.969871
Target:  5'- -gGCCAGGcccUGCAuccggcaccacGCCCgg--GGGCCa -3'
miRNA:   3'- cgCGGUUC---ACGUu----------UGGGauuaCCCGG- -5'
13344 3' -52.3 NC_003409.1 + 98794 0.67 0.963339
Target:  5'- uUGCCAGGUGCAcACCgaAGUGuuucuuccuGGCa -3'
miRNA:   3'- cGCGGUUCACGUuUGGgaUUAC---------CCGg -5'
13344 3' -52.3 NC_003409.1 + 107649 0.67 0.963339
Target:  5'- cGCuGCCAGG-GCAu-CCC-AGUcagcGGGCCg -3'
miRNA:   3'- -CG-CGGUUCaCGUuuGGGaUUA----CCCGG- -5'
13344 3' -52.3 NC_003409.1 + 59260 0.67 0.962988
Target:  5'- aCGCCGAGUGCGGcauacauGCCuCUGgcgacGUcGGcGCCg -3'
miRNA:   3'- cGCGGUUCACGUU-------UGG-GAU-----UA-CC-CGG- -5'
13344 3' -52.3 NC_003409.1 + 107076 0.67 0.955878
Target:  5'- aGCGCCAAcGUGguc-CCCUcaccaaGAaGGGCCg -3'
miRNA:   3'- -CGCGGUU-CACguuuGGGA------UUaCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.