miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13345 3' -57 NC_003409.1 + 124930 0.81 0.137664
Target:  5'- gAGCAGGAGUUAgAGgAGCAGGAGCa -3'
miRNA:   3'- gUCGUCCUCGGUgUUgUCGUCCUCGg -5'
13345 3' -57 NC_003409.1 + 125215 0.8 0.165084
Target:  5'- gAGCAGGAGCagcaGgAugAGCAGGAGCa -3'
miRNA:   3'- gUCGUCCUCGg---UgUugUCGUCCUCGg -5'
13345 3' -57 NC_003409.1 + 24391 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 24351 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 24271 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 24551 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 24511 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 24471 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 24431 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 24311 0.79 0.18758
Target:  5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3'
miRNA:   3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125045 0.79 0.18758
Target:  5'- gCAGgAGGAGCaggaGCAGCAGgAGGAGCa -3'
miRNA:   3'- -GUCgUCCUCGg---UGUUGUCgUCCUCGg -5'
13345 3' -57 NC_003409.1 + 125179 0.79 0.192392
Target:  5'- gAGCAGGAGCagcaggaugaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- gUCGUCCUCGg---------UGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 133539 0.78 0.229177
Target:  5'- aCAGCAGGccgagauGCUGCAGgAGCGGGAGUCc -3'
miRNA:   3'- -GUCGUCCu------CGGUGUUgUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 124702 0.78 0.234893
Target:  5'- gAGCAGGAGCaggaGgAGCAGgAGGAGCa -3'
miRNA:   3'- gUCGUCCUCGg---UgUUGUCgUCCUCGg -5'
13345 3' -57 NC_003409.1 + 125138 0.77 0.271732
Target:  5'- gCAGCAGGAugaGCaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGUCCU---CGgUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 125102 0.77 0.271732
Target:  5'- gCAGCAGGAugaGCaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGUCCU---CGgUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 124768 0.76 0.285005
Target:  5'- gAGCAGGAGgUggaagaGCAAgAGCAGGAGCa -3'
miRNA:   3'- gUCGUCCUCgG------UGUUgUCGUCCUCGg -5'
13345 3' -57 NC_003409.1 + 73491 0.76 0.285005
Target:  5'- gGGCAGGGGCgcucagaAUAACGGCGGGuuuuGCCa -3'
miRNA:   3'- gUCGUCCUCGg------UGUUGUCGUCCu---CGG- -5'
13345 3' -57 NC_003409.1 + 124612 0.76 0.301601
Target:  5'- gAGCAGGAGUUagaggagguggaagaGCAggaGCAGCAGGAGUUa -3'
miRNA:   3'- gUCGUCCUCGG---------------UGU---UGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 124804 0.75 0.320411
Target:  5'- gAGCAGGAGUUAgAGgAGCAGGAGgUg -3'
miRNA:   3'- gUCGUCCUCGGUgUUgUCGUCCUCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.