miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13347 5' -47.8 NC_003409.1 + 134191 0.66 0.999037
Target:  5'- gGuGCCACCGGGuACgagagUGAGUgUGCc- -3'
miRNA:   3'- aCuCGGUGGUCC-UGa----AUUUAaACGac -5'
13347 5' -47.8 NC_003409.1 + 98163 0.66 0.998816
Target:  5'- aGGGCUcguGCCAGGGCgcc-GUUUGUa- -3'
miRNA:   3'- aCUCGG---UGGUCCUGaauuUAAACGac -5'
13347 5' -47.8 NC_003409.1 + 66658 0.66 0.998243
Target:  5'- aGAGCCGCUggguggGGGAUggugGGAg--GCUGg -3'
miRNA:   3'- aCUCGGUGG------UCCUGaa--UUUaaaCGAC- -5'
13347 5' -47.8 NC_003409.1 + 95756 0.67 0.996959
Target:  5'- uUGGGCCGCUggAGGACgccucUGAGgacGCUGc -3'
miRNA:   3'- -ACUCGGUGG--UCCUGa----AUUUaaaCGAC- -5'
13347 5' -47.8 NC_003409.1 + 80696 0.67 0.996959
Target:  5'- -aGGCgACCAGGACUgGGAUaUGUUa -3'
miRNA:   3'- acUCGgUGGUCCUGAaUUUAaACGAc -5'
13347 5' -47.8 NC_003409.1 + 63801 0.67 0.995731
Target:  5'- aGGGUC-CCGGGAgugUGAAUcUGCUGa -3'
miRNA:   3'- aCUCGGuGGUCCUga-AUUUAaACGAC- -5'
13347 5' -47.8 NC_003409.1 + 23282 0.68 0.992065
Target:  5'- --cGCCGCCAu--CUUGAAUUUGCUa -3'
miRNA:   3'- acuCGGUGGUccuGAAUUUAAACGAc -5'
13347 5' -47.8 NC_003409.1 + 119727 0.68 0.992065
Target:  5'- --cGCCGCCAu--CUUGAAUUUGCUa -3'
miRNA:   3'- acuCGGUGGUccuGAAUUUAAACGAc -5'
13347 5' -47.8 NC_003409.1 + 24535 0.7 0.980084
Target:  5'- gGuGCUGCCGGGGCUccuGGggUGCUGc -3'
miRNA:   3'- aCuCGGUGGUCCUGAau-UUaaACGAC- -5'
13347 5' -47.8 NC_003409.1 + 112252 0.7 0.980084
Target:  5'- cGAGCCACCAGGGgaUGGuga-GCg- -3'
miRNA:   3'- aCUCGGUGGUCCUgaAUUuaaaCGac -5'
13347 5' -47.8 NC_003409.1 + 24455 0.7 0.980084
Target:  5'- gGuGCUGCCGGGGCUccuGGggUGCUGc -3'
miRNA:   3'- aCuCGGUGGUCCUGAau-UUaaACGAC- -5'
13347 5' -47.8 NC_003409.1 + 24695 0.7 0.980084
Target:  5'- gGuGCUGCCGGGGCUccuGGggUGCUGc -3'
miRNA:   3'- aCuCGGUGGUCCUGAau-UUaaACGAC- -5'
13347 5' -47.8 NC_003409.1 + 24495 0.7 0.980084
Target:  5'- gGuGCUGCCGGGGCUccuGGggUGCUGc -3'
miRNA:   3'- aCuCGGUGGUCCUGAau-UUaaACGAC- -5'
13347 5' -47.8 NC_003409.1 + 24615 0.7 0.980084
Target:  5'- gGuGCUGCCGGGGCUccuGGggUGCUGc -3'
miRNA:   3'- aCuCGGUGGUCCUGAau-UUaaACGAC- -5'
13347 5' -47.8 NC_003409.1 + 24575 0.7 0.980084
Target:  5'- gGuGCUGCCGGGGCUccuGGggUGCUGc -3'
miRNA:   3'- aCuCGGUGGUCCUGAau-UUaaACGAC- -5'
13347 5' -47.8 NC_003409.1 + 24655 0.7 0.980084
Target:  5'- gGuGCUGCCGGGGCUccuGGggUGCUGc -3'
miRNA:   3'- aCuCGGUGGUCCUGAau-UUaaACGAC- -5'
13347 5' -47.8 NC_003409.1 + 126908 0.7 0.974955
Target:  5'- gGAGCCACCgguaaaguAGGACUaGAcacaaaUGCUGg -3'
miRNA:   3'- aCUCGGUGG--------UCCUGAaUUuaa---ACGAC- -5'
13347 5' -47.8 NC_003409.1 + 32418 0.7 0.972056
Target:  5'- cGAGCCGcugagcCCGGGGCUUAGGag-GCUc -3'
miRNA:   3'- aCUCGGU------GGUCCUGAAUUUaaaCGAc -5'
13347 5' -47.8 NC_003409.1 + 49242 0.71 0.967937
Target:  5'- cGAGCCGCCAGGAacacgcgaaUGCa- -3'
miRNA:   3'- aCUCGGUGGUCCUgaauuuaa-ACGac -5'
13347 5' -47.8 NC_003409.1 + 120440 0.71 0.961923
Target:  5'- uUGAgcGCCACC-GGACggGGAUUuaUGCUGu -3'
miRNA:   3'- -ACU--CGGUGGuCCUGaaUUUAA--ACGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.