miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13355 5' -56.1 NC_003409.1 + 133149 1.13 0.001479
Target:  5'- gUCUCCAAGCUACCCGACGAGGUGCGCa -3'
miRNA:   3'- -AGAGGUUCGAUGGGCUGCUCCACGCG- -5'
13355 5' -56.1 NC_003409.1 + 95893 0.78 0.28721
Target:  5'- aCUCCAGGCUaACCCGgcucaggGCGucGGUGUGCa -3'
miRNA:   3'- aGAGGUUCGA-UGGGC-------UGCu-CCACGCG- -5'
13355 5' -56.1 NC_003409.1 + 131132 0.73 0.523365
Target:  5'- uUCUCCAucuGCUG--UGGCGAGGUGgGCu -3'
miRNA:   3'- -AGAGGUu--CGAUggGCUGCUCCACgCG- -5'
13355 5' -56.1 NC_003409.1 + 64274 0.72 0.603913
Target:  5'- cCUCUGAGUaGCCCGGaauauaGAGG-GCGCu -3'
miRNA:   3'- aGAGGUUCGaUGGGCUg-----CUCCaCGCG- -5'
13355 5' -56.1 NC_003409.1 + 102668 0.7 0.665367
Target:  5'- aUCUCgAAGaugGCCCGcaugaguuGCGAGGgcaGCGCg -3'
miRNA:   3'- -AGAGgUUCga-UGGGC--------UGCUCCa--CGCG- -5'
13355 5' -56.1 NC_003409.1 + 118292 0.7 0.675563
Target:  5'- --aCCAGGUU-CCCGGggaggaggcUGGGGUGCGCc -3'
miRNA:   3'- agaGGUUCGAuGGGCU---------GCUCCACGCG- -5'
13355 5' -56.1 NC_003409.1 + 64429 0.7 0.685724
Target:  5'- aUUCCGGGCUACUCa--GAGGUGaGCa -3'
miRNA:   3'- aGAGGUUCGAUGGGcugCUCCACgCG- -5'
13355 5' -56.1 NC_003409.1 + 88011 0.7 0.685724
Target:  5'- aUCUCCGGGa-ACCCgccacguaaagGACGAGGccUGCGUa -3'
miRNA:   3'- -AGAGGUUCgaUGGG-----------CUGCUCC--ACGCG- -5'
13355 5' -56.1 NC_003409.1 + 19133 0.7 0.705903
Target:  5'- gCUCCAGGCgaccaaaaugGCCCcGCGGGG-GCaGCu -3'
miRNA:   3'- aGAGGUUCGa---------UGGGcUGCUCCaCG-CG- -5'
13355 5' -56.1 NC_003409.1 + 132589 0.7 0.705903
Target:  5'- -gUCCAuGCUGgCCGA-GAGGgugGCGCc -3'
miRNA:   3'- agAGGUuCGAUgGGCUgCUCCa--CGCG- -5'
13355 5' -56.1 NC_003409.1 + 20171 0.69 0.739593
Target:  5'- aUCUCCAGGCgcggaaagggaCGugGA-GUGCGCg -3'
miRNA:   3'- -AGAGGUUCGaugg-------GCugCUcCACGCG- -5'
13355 5' -56.1 NC_003409.1 + 31548 0.69 0.764641
Target:  5'- cUCgCCAcAGCUGCCUggauauagGACGGGGaaGCGCa -3'
miRNA:   3'- -AGaGGU-UCGAUGGG--------CUGCUCCa-CGCG- -5'
13355 5' -56.1 NC_003409.1 + 77428 0.68 0.783374
Target:  5'- uUUUUCAAGUUugUgGACGAGGUGguccaUGCa -3'
miRNA:   3'- -AGAGGUUCGAugGgCUGCUCCAC-----GCG- -5'
13355 5' -56.1 NC_003409.1 + 11896 0.68 0.783374
Target:  5'- uUCUgCCGAGCaGCuuGAgGAcGGUGcCGCu -3'
miRNA:   3'- -AGA-GGUUCGaUGggCUgCU-CCAC-GCG- -5'
13355 5' -56.1 NC_003409.1 + 44138 0.67 0.836025
Target:  5'- --aCCAAGCUuuucccgauCCCGACGGGGgacaUGgGUa -3'
miRNA:   3'- agaGGUUCGAu--------GGGCUGCUCC----ACgCG- -5'
13355 5' -56.1 NC_003409.1 + 113074 0.67 0.844195
Target:  5'- gUCUUCGgucgcAGCcacACCgCGACG-GGUGUGCg -3'
miRNA:   3'- -AGAGGU-----UCGa--UGG-GCUGCuCCACGCG- -5'
13355 5' -56.1 NC_003409.1 + 35613 0.67 0.852171
Target:  5'- -aUCCGuGCUGgUUGugGAGGUGCu- -3'
miRNA:   3'- agAGGUuCGAUgGGCugCUCCACGcg -5'
13355 5' -56.1 NC_003409.1 + 56012 0.67 0.859179
Target:  5'- --aCCAgggcgucaaugucGGCgACCCGugGgAGGUcGCGCg -3'
miRNA:   3'- agaGGU-------------UCGaUGGGCugC-UCCA-CGCG- -5'
13355 5' -56.1 NC_003409.1 + 87358 0.66 0.874149
Target:  5'- aCUCCAauuguaacaugauGGUuucgcaUACCCGggcGCGGGG-GCGCu -3'
miRNA:   3'- aGAGGU-------------UCG------AUGGGC---UGCUCCaCGCG- -5'
13355 5' -56.1 NC_003409.1 + 130868 0.66 0.882014
Target:  5'- gUCUCCAGGUUuaccGCCCaGCGcugGGGUGgUGUg -3'
miRNA:   3'- -AGAGGUUCGA----UGGGcUGC---UCCAC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.