Results 1 - 20 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13355 | 5' | -56.1 | NC_003409.1 | + | 64274 | 0.72 | 0.603913 |
Target: 5'- cCUCUGAGUaGCCCGGaauauaGAGG-GCGCu -3' miRNA: 3'- aGAGGUUCGaUGGGCUg-----CUCCaCGCG- -5' |
|||||||
13355 | 5' | -56.1 | NC_003409.1 | + | 118085 | 0.66 | 0.90208 |
Target: 5'- --aCCAGGUU-CCCGGgGAGGaGgGCa -3' miRNA: 3'- agaGGUUCGAuGGGCUgCUCCaCgCG- -5' |
|||||||
13355 | 5' | -56.1 | NC_003409.1 | + | 118131 | 0.66 | 0.90208 |
Target: 5'- --aCCAGGUU-CCCGGgGAGGaGgGCa -3' miRNA: 3'- agaGGUUCGAuGGGCUgCUCCaCgCG- -5' |
|||||||
13355 | 5' | -56.1 | NC_003409.1 | + | 118246 | 0.66 | 0.90208 |
Target: 5'- --aCCAGGUU-CCCGGgGAGGaGgGCa -3' miRNA: 3'- agaGGUUCGAuGGGCUgCUCCaCgCG- -5' |
|||||||
13355 | 5' | -56.1 | NC_003409.1 | + | 44138 | 0.67 | 0.836025 |
Target: 5'- --aCCAAGCUuuucccgauCCCGACGGGGgacaUGgGUa -3' miRNA: 3'- agaGGUUCGAu--------GGGCUGCUCC----ACgCG- -5' |
|||||||
13355 | 5' | -56.1 | NC_003409.1 | + | 113074 | 0.67 | 0.844195 |
Target: 5'- gUCUUCGgucgcAGCcacACCgCGACG-GGUGUGCg -3' miRNA: 3'- -AGAGGU-----UCGa--UGG-GCUGCuCCACGCG- -5' |
|||||||
13355 | 5' | -56.1 | NC_003409.1 | + | 130868 | 0.66 | 0.882014 |
Target: 5'- gUCUCCAGGUUuaccGCCCaGCGcugGGGUGgUGUg -3' miRNA: 3'- -AGAGGUUCGA----UGGGcUGC---UCCAC-GCG- -5' |
|||||||
13355 | 5' | -56.1 | NC_003409.1 | + | 108393 | 0.66 | 0.882014 |
Target: 5'- ---aCGuGCUGCUgGACGAGGUGaaaaaGCa -3' miRNA: 3'- agagGUuCGAUGGgCUGCUCCACg----CG- -5' |
|||||||
13355 | 5' | -56.1 | NC_003409.1 | + | 38606 | 0.66 | 0.895621 |
Target: 5'- aUCcagCCAAGUUGCgCGcCGAGGcGcCGCa -3' miRNA: 3'- -AGa--GGUUCGAUGgGCuGCUCCaC-GCG- -5' |
|||||||
13355 | 5' | -56.1 | NC_003409.1 | + | 118062 | 0.66 | 0.90208 |
Target: 5'- --aCCAGGUU-CCCGGgGAGGaGgGCa -3' miRNA: 3'- agaGGUUCGAuGGGCUgCUCCaCgCG- -5' |
|||||||
13355 | 5' | -56.1 | NC_003409.1 | + | 115590 | 0.66 | 0.90208 |
Target: 5'- gCUCaGAGCUcCuuGACGAGccGCGCc -3' miRNA: 3'- aGAGgUUCGAuGggCUGCUCcaCGCG- -5' |
|||||||
13355 | 5' | -56.1 | NC_003409.1 | + | 119798 | 0.66 | 0.895621 |
Target: 5'- --gCCAGGCg--CCGGCGuGG-GCGCc -3' miRNA: 3'- agaGGUUCGaugGGCUGCuCCaCGCG- -5' |
|||||||
13355 | 5' | -56.1 | NC_003409.1 | + | 118292 | 0.7 | 0.675563 |
Target: 5'- --aCCAGGUU-CCCGGggaggaggcUGGGGUGCGCc -3' miRNA: 3'- agaGGUUCGAuGGGCU---------GCUCCACGCG- -5' |
|||||||
13355 | 5' | -56.1 | NC_003409.1 | + | 118016 | 0.66 | 0.90208 |
Target: 5'- --aCCAGGUU-CCCGGgGAGGaGgGCa -3' miRNA: 3'- agaGGUUCGAuGGGCUgCUCCaCgCG- -5' |
|||||||
13355 | 5' | -56.1 | NC_003409.1 | + | 88011 | 0.7 | 0.685724 |
Target: 5'- aUCUCCGGGa-ACCCgccacguaaagGACGAGGccUGCGUa -3' miRNA: 3'- -AGAGGUUCgaUGGG-----------CUGCUCC--ACGCG- -5' |
|||||||
13355 | 5' | -56.1 | NC_003409.1 | + | 133302 | 0.66 | 0.888931 |
Target: 5'- aCUgCCAGggcGUUGCCaggaguggUGGCGAuGGUGCGCa -3' miRNA: 3'- aGA-GGUU---CGAUGG--------GCUGCU-CCACGCG- -5' |
|||||||
13355 | 5' | -56.1 | NC_003409.1 | + | 118039 | 0.66 | 0.90208 |
Target: 5'- --aCCAGGUU-CCCGGgGAGGaGgGCa -3' miRNA: 3'- agaGGUUCGAuGGGCUgCUCCaCgCG- -5' |
|||||||
13355 | 5' | -56.1 | NC_003409.1 | + | 118108 | 0.66 | 0.90208 |
Target: 5'- --aCCAGGUU-CCCGGgGAGGaGgGCa -3' miRNA: 3'- agaGGUUCGAuGGGCUgCUCCaCgCG- -5' |
|||||||
13355 | 5' | -56.1 | NC_003409.1 | + | 20171 | 0.69 | 0.739593 |
Target: 5'- aUCUCCAGGCgcggaaagggaCGugGA-GUGCGCg -3' miRNA: 3'- -AGAGGUUCGaugg-------GCugCUcCACGCG- -5' |
|||||||
13355 | 5' | -56.1 | NC_003409.1 | + | 87358 | 0.66 | 0.874149 |
Target: 5'- aCUCCAauuguaacaugauGGUuucgcaUACCCGggcGCGGGG-GCGCu -3' miRNA: 3'- aGAGGU-------------UCG------AUGGGC---UGCUCCaCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home