miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13355 5' -56.1 NC_003409.1 + 11896 0.68 0.783374
Target:  5'- uUCUgCCGAGCaGCuuGAgGAcGGUGcCGCu -3'
miRNA:   3'- -AGA-GGUUCGaUGggCUgCU-CCAC-GCG- -5'
13355 5' -56.1 NC_003409.1 + 16161 0.66 0.895621
Target:  5'- gUCUCCGuuuGCUGCuuGc---GGUGCGUg -3'
miRNA:   3'- -AGAGGUu--CGAUGggCugcuCCACGCG- -5'
13355 5' -56.1 NC_003409.1 + 19133 0.7 0.705903
Target:  5'- gCUCCAGGCgaccaaaaugGCCCcGCGGGG-GCaGCu -3'
miRNA:   3'- aGAGGUUCGa---------UGGGcUGCUCCaCG-CG- -5'
13355 5' -56.1 NC_003409.1 + 20171 0.69 0.739593
Target:  5'- aUCUCCAGGCgcggaaagggaCGugGA-GUGCGCg -3'
miRNA:   3'- -AGAGGUUCGaugg-------GCugCUcCACGCG- -5'
13355 5' -56.1 NC_003409.1 + 24443 0.66 0.888931
Target:  5'- gCUCCugggguGCUGCCgGGgcuccUGGGGUGCuGCc -3'
miRNA:   3'- aGAGGuu----CGAUGGgCU-----GCUCCACG-CG- -5'
13355 5' -56.1 NC_003409.1 + 24483 0.66 0.888931
Target:  5'- gCUCCugggguGCUGCCgGGgcuccUGGGGUGCuGCc -3'
miRNA:   3'- aGAGGuu----CGAUGGgCU-----GCUCCACG-CG- -5'
13355 5' -56.1 NC_003409.1 + 24523 0.66 0.888931
Target:  5'- gCUCCugggguGCUGCCgGGgcuccUGGGGUGCuGCc -3'
miRNA:   3'- aGAGGuu----CGAUGGgCU-----GCUCCACG-CG- -5'
13355 5' -56.1 NC_003409.1 + 24563 0.66 0.888931
Target:  5'- gCUCCugggguGCUGCCgGGgcuccUGGGGUGCuGCc -3'
miRNA:   3'- aGAGGuu----CGAUGGgCU-----GCUCCACG-CG- -5'
13355 5' -56.1 NC_003409.1 + 24603 0.66 0.888931
Target:  5'- gCUCCugggguGCUGCCgGGgcuccUGGGGUGCuGCc -3'
miRNA:   3'- aGAGGuu----CGAUGGgCU-----GCUCCACG-CG- -5'
13355 5' -56.1 NC_003409.1 + 24643 0.66 0.888931
Target:  5'- gCUCCugggguGCUGCCgGGgcuccUGGGGUGCuGCc -3'
miRNA:   3'- aGAGGuu----CGAUGGgCU-----GCUCCACG-CG- -5'
13355 5' -56.1 NC_003409.1 + 24683 0.66 0.888931
Target:  5'- gCUCCugggguGCUGCCgGGgcuccUGGGGUGCuGCc -3'
miRNA:   3'- aGAGGuu----CGAUGGgCU-----GCUCCACG-CG- -5'
13355 5' -56.1 NC_003409.1 + 24723 0.66 0.888931
Target:  5'- gCUCCugggguGCUGCCgGGgcuccUGGGGUGCuGCc -3'
miRNA:   3'- aGAGGuu----CGAUGGgCU-----GCUCCACG-CG- -5'
13355 5' -56.1 NC_003409.1 + 31548 0.69 0.764641
Target:  5'- cUCgCCAcAGCUGCCUggauauagGACGGGGaaGCGCa -3'
miRNA:   3'- -AGaGGU-UCGAUGGG--------CUGCUCCa-CGCG- -5'
13355 5' -56.1 NC_003409.1 + 35613 0.67 0.852171
Target:  5'- -aUCCGuGCUGgUUGugGAGGUGCu- -3'
miRNA:   3'- agAGGUuCGAUgGGCugCUCCACGcg -5'
13355 5' -56.1 NC_003409.1 + 38606 0.66 0.895621
Target:  5'- aUCcagCCAAGUUGCgCGcCGAGGcGcCGCa -3'
miRNA:   3'- -AGa--GGUUCGAUGgGCuGCUCCaC-GCG- -5'
13355 5' -56.1 NC_003409.1 + 44138 0.67 0.836025
Target:  5'- --aCCAAGCUuuucccgauCCCGACGGGGgacaUGgGUa -3'
miRNA:   3'- agaGGUUCGAu--------GGGCUGCUCC----ACgCG- -5'
13355 5' -56.1 NC_003409.1 + 56012 0.67 0.859179
Target:  5'- --aCCAgggcgucaaugucGGCgACCCGugGgAGGUcGCGCg -3'
miRNA:   3'- agaGGU-------------UCGaUGGGCugC-UCCA-CGCG- -5'
13355 5' -56.1 NC_003409.1 + 64274 0.72 0.603913
Target:  5'- cCUCUGAGUaGCCCGGaauauaGAGG-GCGCu -3'
miRNA:   3'- aGAGGUUCGaUGGGCUg-----CUCCaCGCG- -5'
13355 5' -56.1 NC_003409.1 + 64429 0.7 0.685724
Target:  5'- aUUCCGGGCUACUCa--GAGGUGaGCa -3'
miRNA:   3'- aGAGGUUCGAUGGGcugCUCCACgCG- -5'
13355 5' -56.1 NC_003409.1 + 77428 0.68 0.783374
Target:  5'- uUUUUCAAGUUugUgGACGAGGUGguccaUGCa -3'
miRNA:   3'- -AGAGGUUCGAugGgCUGCUCCAC-----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.