Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13367 | 3' | -56.6 | NC_003409.1 | + | 33645 | 0.71 | 0.60584 |
Target: 5'- aGGUucAAGCGGCGGUUUGGGUGCccucgcGCGAc -3' miRNA: 3'- -UCA--UUUGCUGUCGAGCCCGCGc-----CGCU- -5' |
|||||||
13367 | 3' | -56.6 | NC_003409.1 | + | 29926 | 0.67 | 0.829121 |
Target: 5'- gGGUAAAUGACAa--UGGGCGCuuGGUGAc -3' miRNA: 3'- -UCAUUUGCUGUcgaGCCCGCG--CCGCU- -5' |
|||||||
13367 | 3' | -56.6 | NC_003409.1 | + | 26693 | 0.69 | 0.72761 |
Target: 5'- cGGgauAGCGACAGUa-GGGCGgaCGGCGGg -3' miRNA: 3'- -UCau-UUGCUGUCGagCCCGC--GCCGCU- -5' |
|||||||
13367 | 3' | -56.6 | NC_003409.1 | + | 20817 | 0.66 | 0.858945 |
Target: 5'- --aAAAUGGCuccagggaguuccuGGC-CGGGCGCGGCc- -3' miRNA: 3'- ucaUUUGCUG--------------UCGaGCCCGCGCCGcu -5' |
|||||||
13367 | 3' | -56.6 | NC_003409.1 | + | 15822 | 1.09 | 0.002397 |
Target: 5'- uAGUAAACGACAGCUCGGGCGCGGCGAg -3' miRNA: 3'- -UCAUUUGCUGUCGAGCCCGCGCCGCU- -5' |
|||||||
13367 | 3' | -56.6 | NC_003409.1 | + | 15128 | 0.67 | 0.811953 |
Target: 5'- ----cGCGACGGUagGGGUGCcucGGCGGa -3' miRNA: 3'- ucauuUGCUGUCGagCCCGCG---CCGCU- -5' |
|||||||
13367 | 3' | -56.6 | NC_003409.1 | + | 6400 | 0.69 | 0.737435 |
Target: 5'- gGGUGccAugGACGGCcgaGGGUGUGGCc- -3' miRNA: 3'- -UCAU--UugCUGUCGag-CCCGCGCCGcu -5' |
|||||||
13367 | 3' | -56.6 | NC_003409.1 | + | 4834 | 0.68 | 0.784996 |
Target: 5'- ---cAugGGCAuCUCGGaGgGCGGCGAu -3' miRNA: 3'- ucauUugCUGUcGAGCC-CgCGCCGCU- -5' |
|||||||
13367 | 3' | -56.6 | NC_003409.1 | + | 3008 | 0.72 | 0.545114 |
Target: 5'- gGGaAAGCGACAGaa-GGGgGCGGCGu -3' miRNA: 3'- -UCaUUUGCUGUCgagCCCgCGCCGCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home