miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13375 5' -58.6 NC_003409.1 + 46360 0.66 0.785495
Target:  5'- --uCUCGcAGCGAGGAaCCCCaGCAGu -3'
miRNA:   3'- aauGGGCaUUGCUCCUcGGGGcCGUC- -5'
13375 5' -58.6 NC_003409.1 + 85000 0.66 0.785495
Target:  5'- -gACCUGgAugGuucaucgcaAGGAGCCCCGGagcCAGa -3'
miRNA:   3'- aaUGGGCaUugC---------UCCUCGGGGCC---GUC- -5'
13375 5' -58.6 NC_003409.1 + 70207 0.66 0.766914
Target:  5'- aUGCCgGgguGCGcGGGGGUCCCGaGUAGu -3'
miRNA:   3'- aAUGGgCau-UGC-UCCUCGGGGC-CGUC- -5'
13375 5' -58.6 NC_003409.1 + 51191 0.66 0.766914
Target:  5'- --uCCCGUAcUGGGGgaGGCCCaaGGCGGg -3'
miRNA:   3'- aauGGGCAUuGCUCC--UCGGGg-CCGUC- -5'
13375 5' -58.6 NC_003409.1 + 74482 0.66 0.757441
Target:  5'- -cGCCCGcUAACGAGGuacaGGagUCCGGCAc -3'
miRNA:   3'- aaUGGGC-AUUGCUCC----UCg-GGGCCGUc -5'
13375 5' -58.6 NC_003409.1 + 125843 0.66 0.747857
Target:  5'- -aGCCacaGcAGC-AGGAGCCCCuGCAGg -3'
miRNA:   3'- aaUGGg--CaUUGcUCCUCGGGGcCGUC- -5'
13375 5' -58.6 NC_003409.1 + 125942 0.66 0.747857
Target:  5'- -aGCCacaGcAGC-AGGAGCCCCuGCAGg -3'
miRNA:   3'- aaUGGg--CaUUGcUCCUCGGGGcCGUC- -5'
13375 5' -58.6 NC_003409.1 + 125885 0.66 0.747857
Target:  5'- -aGCCacaGcAGC-AGGAGCCCCuGCAGg -3'
miRNA:   3'- aaUGGg--CaUUGcUCCUCGGGGcCGUC- -5'
13375 5' -58.6 NC_003409.1 + 19175 0.66 0.742057
Target:  5'- --cCCCGUggggauaaccaggacGAgGAGGGGCCCgCGGgGGc -3'
miRNA:   3'- aauGGGCA---------------UUgCUCCUCGGG-GCCgUC- -5'
13375 5' -58.6 NC_003409.1 + 126627 0.66 0.738172
Target:  5'- -gGCUCGgGugGAGGAGUCgUGGguGa -3'
miRNA:   3'- aaUGGGCaUugCUCCUCGGgGCCguC- -5'
13375 5' -58.6 NC_003409.1 + 10025 0.67 0.728395
Target:  5'- cUGCCgGcGGCGGGGGGUCCaCGGaCAa -3'
miRNA:   3'- aAUGGgCaUUGCUCCUCGGG-GCC-GUc -5'
13375 5' -58.6 NC_003409.1 + 132225 0.67 0.718536
Target:  5'- -aGCCUcgGUGAUGgcauAGGuGGCCCCGGUGGa -3'
miRNA:   3'- aaUGGG--CAUUGC----UCC-UCGGGGCCGUC- -5'
13375 5' -58.6 NC_003409.1 + 63816 0.67 0.708603
Target:  5'- -aGCCCgGUGACGcaaAGG-GUCCCGGgAGu -3'
miRNA:   3'- aaUGGG-CAUUGC---UCCuCGGGGCCgUC- -5'
13375 5' -58.6 NC_003409.1 + 6610 0.67 0.698606
Target:  5'- gUACCCGUAACGAuGGcaaaGGaaCUGGCGGc -3'
miRNA:   3'- aAUGGGCAUUGCU-CC----UCggGGCCGUC- -5'
13375 5' -58.6 NC_003409.1 + 24575 0.67 0.688553
Target:  5'- -cACCCc-----AGGAGCCCCGGCGc -3'
miRNA:   3'- aaUGGGcauugcUCCUCGGGGCCGUc -5'
13375 5' -58.6 NC_003409.1 + 125651 0.68 0.647964
Target:  5'- -aGCCacaGcAGCG-GGAGCCCCaGCAGc -3'
miRNA:   3'- aaUGGg--CaUUGCuCCUCGGGGcCGUC- -5'
13375 5' -58.6 NC_003409.1 + 87385 0.68 0.637764
Target:  5'- aUACCCG-GGCGcGGGGGCgCUgGGCGGu -3'
miRNA:   3'- aAUGGGCaUUGC-UCCUCG-GGgCCGUC- -5'
13375 5' -58.6 NC_003409.1 + 70893 0.71 0.460089
Target:  5'- aUACCCcuuugugGAUGuGGAGUUCCGGCGGg -3'
miRNA:   3'- aAUGGGca-----UUGCuCCUCGGGGCCGUC- -5'
13375 5' -58.6 NC_003409.1 + 26032 0.72 0.432854
Target:  5'- -gACCCGcgggcgggacgGACGAGGAGCCCaCGGaCGa -3'
miRNA:   3'- aaUGGGCa----------UUGCUCCUCGGG-GCC-GUc -5'
13375 5' -58.6 NC_003409.1 + 24555 0.72 0.432854
Target:  5'- -cACCCc-----AGGAGCCCCGGCAGc -3'
miRNA:   3'- aaUGGGcauugcUCCUCGGGGCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.