miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13379 3' -47.2 NC_003409.1 + 11147 0.66 0.999817
Target:  5'- cCCuGCGAUCU--ACGUcGGGGUAGAUc -3'
miRNA:   3'- -GGuCGUUAGGuaUGCGcUCCUAUUUG- -5'
13379 3' -47.2 NC_003409.1 + 52587 0.66 0.999817
Target:  5'- uCCAGCAGgcguggcggCCAagGgGCGGGGAcguGGCa -3'
miRNA:   3'- -GGUCGUUa--------GGUa-UgCGCUCCUau-UUG- -5'
13379 3' -47.2 NC_003409.1 + 70181 0.66 0.999787
Target:  5'- aUCAGCAcacucuagaacuacUCCAUAUGCcGGGGUGcGCg -3'
miRNA:   3'- -GGUCGUu-------------AGGUAUGCGcUCCUAUuUG- -5'
13379 3' -47.2 NC_003409.1 + 26863 0.66 0.999765
Target:  5'- -aGGCGGa--GaGCGCGGGGGUGGACg -3'
miRNA:   3'- ggUCGUUaggUaUGCGCUCCUAUUUG- -5'
13379 3' -47.2 NC_003409.1 + 85844 0.66 0.999765
Target:  5'- aCCAGCGGUaaagGCGCGAaaugguagaggGGGUGGAa -3'
miRNA:   3'- -GGUCGUUAgguaUGCGCU-----------CCUAUUUg -5'
13379 3' -47.2 NC_003409.1 + 131228 0.66 0.999765
Target:  5'- gCCAGCuacgCCA-GCGCcaGGGGAUGGGu -3'
miRNA:   3'- -GGUCGuua-GGUaUGCG--CUCCUAUUUg -5'
13379 3' -47.2 NC_003409.1 + 52472 0.66 0.999699
Target:  5'- gUCuGCGAuuUCCGcguCGCGAGGAauGGCg -3'
miRNA:   3'- -GGuCGUU--AGGUau-GCGCUCCUauUUG- -5'
13379 3' -47.2 NC_003409.1 + 26348 0.66 0.999618
Target:  5'- uCCAGCucUCCGguacagGCGCaGGGGUGuauGCc -3'
miRNA:   3'- -GGUCGuuAGGUa-----UGCGcUCCUAUu--UG- -5'
13379 3' -47.2 NC_003409.1 + 106371 0.67 0.999398
Target:  5'- aCAGCAGUuuUCAUAUcugGGGGGUGAACu -3'
miRNA:   3'- gGUCGUUA--GGUAUGcg-CUCCUAUUUG- -5'
13379 3' -47.2 NC_003409.1 + 109681 0.67 0.999398
Target:  5'- uCCAGCugaggcuUCCA-GCGUGAGGuacGGCa -3'
miRNA:   3'- -GGUCGuu-----AGGUaUGCGCUCCuauUUG- -5'
13379 3' -47.2 NC_003409.1 + 109767 0.67 0.998866
Target:  5'- uCCuGCAcguugacgugGUgCCAUcGCGCGGGGAaAAACa -3'
miRNA:   3'- -GGuCGU----------UA-GGUA-UGCGCUCCUaUUUG- -5'
13379 3' -47.2 NC_003409.1 + 135175 0.67 0.998866
Target:  5'- uCCAGCAcauGUCCAUGCua-AGGAaaUAAACc -3'
miRNA:   3'- -GGUCGU---UAGGUAUGcgcUCCU--AUUUG- -5'
13379 3' -47.2 NC_003409.1 + 28963 0.67 0.998866
Target:  5'- gCCAGUuguagCCcccuuuuaugAUAUGCGAGGAUAcuuAACg -3'
miRNA:   3'- -GGUCGuua--GG----------UAUGCGCUCCUAU---UUG- -5'
13379 3' -47.2 NC_003409.1 + 96476 0.67 0.998843
Target:  5'- gCCAGCuGUCCccACGCuggacagcacacuGAGGGUuGGCg -3'
miRNA:   3'- -GGUCGuUAGGuaUGCG-------------CUCCUAuUUG- -5'
13379 3' -47.2 NC_003409.1 + 54446 0.68 0.998616
Target:  5'- --uGCGGUgUGUGCGCGAGGAcgcGCa -3'
miRNA:   3'- gguCGUUAgGUAUGCGCUCCUauuUG- -5'
13379 3' -47.2 NC_003409.1 + 104315 0.68 0.997974
Target:  5'- cCCAGUcGUCUGUGCG-GAGGAa---- -3'
miRNA:   3'- -GGUCGuUAGGUAUGCgCUCCUauuug -5'
13379 3' -47.2 NC_003409.1 + 31070 0.68 0.99757
Target:  5'- aCCAcGCAuacaCCAUGCGCGGcGGUGGAg -3'
miRNA:   3'- -GGU-CGUua--GGUAUGCGCUcCUAUUUg -5'
13379 3' -47.2 NC_003409.1 + 58553 0.68 0.997101
Target:  5'- uUCGGUGAUCCG-AgGCGAGGAa---- -3'
miRNA:   3'- -GGUCGUUAGGUaUgCGCUCCUauuug -5'
13379 3' -47.2 NC_003409.1 + 117207 0.68 0.996946
Target:  5'- gCAGCAGUCCGccgauaucuuguagUugGgGAGGuuauccAUAAGCa -3'
miRNA:   3'- gGUCGUUAGGU--------------AugCgCUCC------UAUUUG- -5'
13379 3' -47.2 NC_003409.1 + 88688 0.69 0.996558
Target:  5'- gCCGGCAGg-CAgggGCGCGGGGGcu-GCa -3'
miRNA:   3'- -GGUCGUUagGUa--UGCGCUCCUauuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.