miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13384 5' -58.7 NC_003409.1 + 60132 0.66 0.786435
Target:  5'- -aACuUUCGCCAGGCGGcgcugcggcgggagaGCCAAUCUgaugCCa -3'
miRNA:   3'- caUG-GAGCGGUCCGUC---------------CGGUUGGA----GG- -5'
13384 5' -58.7 NC_003409.1 + 110022 0.66 0.782776
Target:  5'- -gGCaguguugCGCCGGGC--GCCAccGCCUCCc -3'
miRNA:   3'- caUGga-----GCGGUCCGucCGGU--UGGAGG- -5'
13384 5' -58.7 NC_003409.1 + 13683 0.66 0.782776
Target:  5'- -gACC-CGCUAGGCGuuccGGCgAgaugGCCUCUa -3'
miRNA:   3'- caUGGaGCGGUCCGU----CCGgU----UGGAGG- -5'
13384 5' -58.7 NC_003409.1 + 94725 0.66 0.782776
Target:  5'- -gACCggaGUCA-GCAGGCCGAUCgaggCCg -3'
miRNA:   3'- caUGGag-CGGUcCGUCCGGUUGGa---GG- -5'
13384 5' -58.7 NC_003409.1 + 133694 0.66 0.782776
Target:  5'- -aGCCUgcacCGCCAGcgguaGCAGGUCuGCCcCCa -3'
miRNA:   3'- caUGGA----GCGGUC-----CGUCCGGuUGGaGG- -5'
13384 5' -58.7 NC_003409.1 + 42939 0.66 0.773536
Target:  5'- -aAUCUgCGUUAGG-AGGUUGGCCUCCg -3'
miRNA:   3'- caUGGA-GCGGUCCgUCCGGUUGGAGG- -5'
13384 5' -58.7 NC_003409.1 + 114721 0.66 0.773536
Target:  5'- --uUCUCGuCCA-GCGGGCaCAGCCUgCa -3'
miRNA:   3'- cauGGAGC-GGUcCGUCCG-GUUGGAgG- -5'
13384 5' -58.7 NC_003409.1 + 47281 0.66 0.764173
Target:  5'- --uCCgCGUUAGGCgcaggcuguccGGGCgAACCUCCu -3'
miRNA:   3'- cauGGaGCGGUCCG-----------UCCGgUUGGAGG- -5'
13384 5' -58.7 NC_003409.1 + 112010 0.66 0.754693
Target:  5'- -gGCCUgGCCucgaAGGCAcGGUgAACgUCCc -3'
miRNA:   3'- caUGGAgCGG----UCCGU-CCGgUUGgAGG- -5'
13384 5' -58.7 NC_003409.1 + 57950 0.66 0.751827
Target:  5'- --gUCUCGUCcgggugcaaaAGGguGGCCAgcaacguuuucaccACCUCCu -3'
miRNA:   3'- cauGGAGCGG----------UCCguCCGGU--------------UGGAGG- -5'
13384 5' -58.7 NC_003409.1 + 42748 0.66 0.745106
Target:  5'- ---aCUCGCaccugCAGGCAGaGCUGACCUUa -3'
miRNA:   3'- caugGAGCG-----GUCCGUC-CGGUUGGAGg -5'
13384 5' -58.7 NC_003409.1 + 127589 0.66 0.745106
Target:  5'- -aACCUUGUUuaccuGGCAGGUgAGCCaCCa -3'
miRNA:   3'- caUGGAGCGGu----CCGUCCGgUUGGaGG- -5'
13384 5' -58.7 NC_003409.1 + 90087 0.67 0.725648
Target:  5'- -cGCCUCGU--GGUAGGCCucucgugUCUCCg -3'
miRNA:   3'- caUGGAGCGguCCGUCCGGuu-----GGAGG- -5'
13384 5' -58.7 NC_003409.1 + 83331 0.67 0.725648
Target:  5'- -gACCUCGCCAaGaAGGUUAcauGCCUCUa -3'
miRNA:   3'- caUGGAGCGGUcCgUCCGGU---UGGAGG- -5'
13384 5' -58.7 NC_003409.1 + 51982 0.67 0.725648
Target:  5'- aGUGCCggGuCCGGcGUAGcacgcGCCAGCCUCUg -3'
miRNA:   3'- -CAUGGagC-GGUC-CGUC-----CGGUUGGAGG- -5'
13384 5' -58.7 NC_003409.1 + 101208 0.67 0.712825
Target:  5'- -cGgCUCGCCuGGGUAGGCaAguguugggucuuuuACCUCCa -3'
miRNA:   3'- caUgGAGCGG-UCCGUCCGgU--------------UGGAGG- -5'
13384 5' -58.7 NC_003409.1 + 18138 0.67 0.705871
Target:  5'- -aGCCUaacugGCCAGG--GGCCAgugagcGCCUCCc -3'
miRNA:   3'- caUGGAg----CGGUCCguCCGGU------UGGAGG- -5'
13384 5' -58.7 NC_003409.1 + 92914 0.67 0.695886
Target:  5'- -gGCCUCuGUCAuGGguuCAGGCCAggaGCUUCCu -3'
miRNA:   3'- caUGGAG-CGGU-CC---GUCCGGU---UGGAGG- -5'
13384 5' -58.7 NC_003409.1 + 107208 0.67 0.685848
Target:  5'- -aGCCUUGUCAcGGCAguGGCCcACUugUCCg -3'
miRNA:   3'- caUGGAGCGGU-CCGU--CCGGuUGG--AGG- -5'
13384 5' -58.7 NC_003409.1 + 108913 0.68 0.655505
Target:  5'- uGUAgCUCgGCCAGcuuuuccuGCAGGCCAGCUagcuggggcgagUCCc -3'
miRNA:   3'- -CAUgGAG-CGGUC--------CGUCCGGUUGG------------AGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.