miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13411 5' -65.2 NC_003409.1 + 118310 0.66 0.500445
Target:  5'- --aGGCUgGGGU-GCGCCGcGCCgGGu -3'
miRNA:   3'- acgCCGAaCCCGcCGCGGCaCGGgCC- -5'
13411 5' -65.2 NC_003409.1 + 74066 0.66 0.482361
Target:  5'- --aGGCUucugguUGGGCGaGCGCCGggaggaacgcgcUGgCCGGc -3'
miRNA:   3'- acgCCGA------ACCCGC-CGCGGC------------ACgGGCC- -5'
13411 5' -65.2 NC_003409.1 + 33655 0.66 0.473438
Target:  5'- gGCGGUUUGGGUGcccucGCGCgacuUGCCCa- -3'
miRNA:   3'- aCGCCGAACCCGC-----CGCGgc--ACGGGcc -5'
13411 5' -65.2 NC_003409.1 + 87025 0.66 0.473438
Target:  5'- aGCGGC--GGGa-GUGUgUGUGCCCGGg -3'
miRNA:   3'- aCGCCGaaCCCgcCGCG-GCACGGGCC- -5'
13411 5' -65.2 NC_003409.1 + 118077 0.66 0.464599
Target:  5'- aUGUGuuaCUaaaUGGGUGGCGCUGgagGCuuGGg -3'
miRNA:   3'- -ACGCc--GA---ACCCGCCGCGGCa--CGggCC- -5'
13411 5' -65.2 NC_003409.1 + 130413 0.66 0.464599
Target:  5'- cGCgGGCUacguGGUGGCGCCGgacaugaaagacUGCCUGa -3'
miRNA:   3'- aCG-CCGAac--CCGCCGCGGC------------ACGGGCc -5'
13411 5' -65.2 NC_003409.1 + 76688 0.66 0.455847
Target:  5'- uUGgGGgUUGGGUuguGGCGUgGUGgCUGGu -3'
miRNA:   3'- -ACgCCgAACCCG---CCGCGgCACgGGCC- -5'
13411 5' -65.2 NC_003409.1 + 109931 0.66 0.454977
Target:  5'- gGCGcaggaacGCUcuGGCGGCGCUggcaagaugccgGUGUCCGGg -3'
miRNA:   3'- aCGC-------CGAacCCGCCGCGG------------CACGGGCC- -5'
13411 5' -65.2 NC_003409.1 + 67810 0.67 0.438614
Target:  5'- gUGCGGCgcgcaGGG-GGCGCCacgaggGCCCu- -3'
miRNA:   3'- -ACGCCGaa---CCCgCCGCGGca----CGGGcc -5'
13411 5' -65.2 NC_003409.1 + 53221 0.67 0.405302
Target:  5'- gUGUGGCUgcuguucuUGGGCguggacuacauGGCGUUcUGUCCGGg -3'
miRNA:   3'- -ACGCCGA--------ACCCG-----------CCGCGGcACGGGCC- -5'
13411 5' -65.2 NC_003409.1 + 24204 0.67 0.405302
Target:  5'- aGCGGU--GGGCGGgGCCccauccuCCCGGc -3'
miRNA:   3'- aCGCCGaaCCCGCCgCGGcac----GGGCC- -5'
13411 5' -65.2 NC_003409.1 + 40540 0.67 0.405302
Target:  5'- cGCGGCcguucGGUGGCGCCaGUGCa-GGc -3'
miRNA:   3'- aCGCCGaac--CCGCCGCGG-CACGggCC- -5'
13411 5' -65.2 NC_003409.1 + 25931 0.67 0.405302
Target:  5'- cGCGGUUggccGGcGCGGCGUCGguaugGCaguaCGGu -3'
miRNA:   3'- aCGCCGAa---CC-CGCCGCGGCa----CGg---GCC- -5'
13411 5' -65.2 NC_003409.1 + 118876 0.67 0.397226
Target:  5'- aGUGGCggUGGGCGGgGCCccuauaauCCUGGc -3'
miRNA:   3'- aCGCCGa-ACCCGCCgCGGcac-----GGGCC- -5'
13411 5' -65.2 NC_003409.1 + 72041 0.68 0.389254
Target:  5'- cGCGGUcugGGGUucugauuccaggGGCGCCGUGUggGGg -3'
miRNA:   3'- aCGCCGaa-CCCG------------CCGCGGCACGggCC- -5'
13411 5' -65.2 NC_003409.1 + 10107 0.68 0.373628
Target:  5'- aUGCGGagggGGGCGGCGaugaCGUGggguuCCCGc -3'
miRNA:   3'- -ACGCCgaa-CCCGCCGCg---GCAC-----GGGCc -5'
13411 5' -65.2 NC_003409.1 + 26313 0.68 0.351
Target:  5'- gGUGGC-UGGGCuugucggcguGGCGuuGUGCaCCuGGa -3'
miRNA:   3'- aCGCCGaACCCG----------CCGCggCACG-GG-CC- -5'
13411 5' -65.2 NC_003409.1 + 119804 0.69 0.329363
Target:  5'- cGcCGGCgUGGGCGccGCGCgCGUGCUCu- -3'
miRNA:   3'- aC-GCCGaACCCGC--CGCG-GCACGGGcc -5'
13411 5' -65.2 NC_003409.1 + 115692 0.69 0.322373
Target:  5'- gGCugGGCUUugugGGGCGacuuGCGCCGcagaaugugGCCCGGg -3'
miRNA:   3'- aCG--CCGAA----CCCGC----CGCGGCa--------CGGGCC- -5'
13411 5' -65.2 NC_003409.1 + 105201 0.69 0.32168
Target:  5'- cGgGGgagUGGGCGGUggcucucugucagGCCGUGCUgGGg -3'
miRNA:   3'- aCgCCga-ACCCGCCG-------------CGGCACGGgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.