miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13412 5' -63.2 NC_003409.1 + 59132 0.66 0.59061
Target:  5'- gACGCCCGCCCCGAggacccaauacCAGuCCGAc---- -3'
miRNA:   3'- aUGUGGGCGGGGCU-----------GUC-GGCUccgcc -5'
13412 5' -63.2 NC_003409.1 + 60201 0.66 0.59061
Target:  5'- aAUACgCGCCCCGGgcagaAGCCaGAGGUa- -3'
miRNA:   3'- aUGUGgGCGGGGCUg----UCGG-CUCCGcc -5'
13412 5' -63.2 NC_003409.1 + 102012 0.66 0.571211
Target:  5'- cAgGCCCGCCUgGAauccuuuuugAGCCGAGGUa- -3'
miRNA:   3'- aUgUGGGCGGGgCUg---------UCGGCUCCGcc -5'
13412 5' -63.2 NC_003409.1 + 78970 0.66 0.571211
Target:  5'- cACGCCUGCCguuacgCGcCAGCCgGAGGCa- -3'
miRNA:   3'- aUGUGGGCGGg-----GCuGUCGG-CUCCGcc -5'
13412 5' -63.2 NC_003409.1 + 31376 0.66 0.570244
Target:  5'- cGCuucCCCGUCCUauauccaGGCAGCUGuGGCGa -3'
miRNA:   3'- aUGu--GGGCGGGG-------CUGUCGGCuCCGCc -5'
13412 5' -63.2 NC_003409.1 + 94346 0.66 0.561567
Target:  5'- cACAaguuUCCGCagCCCGACaaccGGCUGGGGgGGg -3'
miRNA:   3'- aUGU----GGGCG--GGGCUG----UCGGCUCCgCC- -5'
13412 5' -63.2 NC_003409.1 + 97136 0.66 0.54242
Target:  5'- -uUAUCCagGCCaaGGCGGCCGGGGUGa -3'
miRNA:   3'- auGUGGG--CGGggCUGUCGGCUCCGCc -5'
13412 5' -63.2 NC_003409.1 + 91592 0.67 0.523494
Target:  5'- gACACCCccuuGCCuuGGCAGCUGA-GUGa -3'
miRNA:   3'- aUGUGGG----CGGggCUGUCGGCUcCGCc -5'
13412 5' -63.2 NC_003409.1 + 112013 0.67 0.523494
Target:  5'- aACGgCCGCCCCcGCgguGGCCGAcGCGa -3'
miRNA:   3'- aUGUgGGCGGGGcUG---UCGGCUcCGCc -5'
13412 5' -63.2 NC_003409.1 + 108995 0.67 0.514125
Target:  5'- cGCGCCCGgCCUGcguccCAGCC--GGCGGc -3'
miRNA:   3'- aUGUGGGCgGGGCu----GUCGGcuCCGCC- -5'
13412 5' -63.2 NC_003409.1 + 82474 0.67 0.514125
Target:  5'- cACGCgaCCGCCUacaauaCGGCAGaacaacaCGGGGCGGa -3'
miRNA:   3'- aUGUG--GGCGGG------GCUGUCg------GCUCCGCC- -5'
13412 5' -63.2 NC_003409.1 + 35546 0.67 0.504826
Target:  5'- gUGCcCaCCGUCCCGACuagcaAGCCGuGGCa- -3'
miRNA:   3'- -AUGuG-GGCGGGGCUG-----UCGGCuCCGcc -5'
13412 5' -63.2 NC_003409.1 + 46189 0.67 0.4956
Target:  5'- uUAUGgCgGCCaCGugGGCCGGGGCGa -3'
miRNA:   3'- -AUGUgGgCGGgGCugUCGGCUCCGCc -5'
13412 5' -63.2 NC_003409.1 + 104928 0.67 0.4956
Target:  5'- cGCuGCCUGCUCUGGCGGgCGgucuuggugAGGCGGu -3'
miRNA:   3'- aUG-UGGGCGGGGCUGUCgGC---------UCCGCC- -5'
13412 5' -63.2 NC_003409.1 + 21968 0.67 0.4956
Target:  5'- aACACCCcaaaaaauccacGCCCCcguGACcGCaGGGGCGGu -3'
miRNA:   3'- aUGUGGG------------CGGGG---CUGuCGgCUCCGCC- -5'
13412 5' -63.2 NC_003409.1 + 24273 0.68 0.477384
Target:  5'- aGCACCCcaggaGCCCCGGCAGCaccccagGAGcccCGGc -3'
miRNA:   3'- aUGUGGG-----CGGGGCUGUCGg------CUCc--GCC- -5'
13412 5' -63.2 NC_003409.1 + 24473 0.68 0.477384
Target:  5'- aGCACCCcaggaGCCCCGGCAGCaccccagGAGcccCGGc -3'
miRNA:   3'- aUGUGGG-----CGGGGCUGUCGg------CUCc--GCC- -5'
13412 5' -63.2 NC_003409.1 + 24353 0.68 0.477384
Target:  5'- aGCACCCcaggaGCCCCGGCAGCaccccagGAGcccCGGc -3'
miRNA:   3'- aUGUGGG-----CGGGGCUGUCGg------CUCc--GCC- -5'
13412 5' -63.2 NC_003409.1 + 24393 0.68 0.477384
Target:  5'- aGCACCCcaggaGCCCCGGCAGCaccccagGAGcccCGGc -3'
miRNA:   3'- aUGUGGG-----CGGGGCUGUCGg------CUCc--GCC- -5'
13412 5' -63.2 NC_003409.1 + 24433 0.68 0.477384
Target:  5'- aGCACCCcaggaGCCCCGGCAGCaccccagGAGcccCGGc -3'
miRNA:   3'- aUGUGGG-----CGGGGCUGUCGg------CUCc--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.